miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 5' -59.9 NC_005259.1 + 4426 0.76 0.128049
Target:  5'- cCGCGCGCccgaGGucGAGCCGCCCGUGCGAg -3'
miRNA:   3'- cGUGUGCG----CC--CUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 33122 0.77 0.106236
Target:  5'- gGC-CACGCGGcAGCCGCCgCGCGUGAUc -3'
miRNA:   3'- -CGuGUGCGCCcUUGGUGG-GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 18873 0.7 0.324288
Target:  5'- uGCGCGCGUGGGAgGCCaACCaCGaUGuCGACc -3'
miRNA:   3'- -CGUGUGCGCCCU-UGG-UGG-GC-GC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 9860 0.7 0.33035
Target:  5'- cCAgACGCGGGAACgcgacgauguuguCGCUuuccucgCGCGCGACg -3'
miRNA:   3'- cGUgUGCGCCCUUG-------------GUGG-------GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 67973 0.68 0.442025
Target:  5'- cGCGCGCaGCGGcGuGGCCACCgccgcgaGCGuCGACu -3'
miRNA:   3'- -CGUGUG-CGCC-C-UUGGUGGg------CGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 62845 0.68 0.432832
Target:  5'- -aGCGCGCGGuuGAcgagcaGCCGCUCGgCGCGAg -3'
miRNA:   3'- cgUGUGCGCC--CU------UGGUGGGC-GCGCUg -5'
23260 5' -59.9 NC_005259.1 + 50119 0.68 0.405938
Target:  5'- cGUACGCaCGGGcACCGCCaCaCGCGAUu -3'
miRNA:   3'- -CGUGUGcGCCCuUGGUGG-GcGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 20336 0.69 0.400687
Target:  5'- uGCACGaccuaugGCGGGcgguacuacgcguCCACCuCGUGCGACg -3'
miRNA:   3'- -CGUGUg------CGCCCuu-----------GGUGG-GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 20963 0.69 0.38012
Target:  5'- cUACACGCGGu-AUCGCCgGgGUGACa -3'
miRNA:   3'- cGUGUGCGCCcuUGGUGGgCgCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6204 0.69 0.371761
Target:  5'- aGCGugaGCGgGGuGAGCCGCCgCGC-CGACa -3'
miRNA:   3'- -CGUg--UGCgCC-CUUGGUGG-GCGcGCUG- -5'
23260 5' -59.9 NC_005259.1 + 34684 0.69 0.363528
Target:  5'- cGCAUugGCGcugcGGAugaugccgaccAUCugCCGCGCGAg -3'
miRNA:   3'- -CGUGugCGC----CCU-----------UGGugGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 53037 0.69 0.363528
Target:  5'- gGCAUcgugaccuCGCGGGAAaUugCUGCGUGACg -3'
miRNA:   3'- -CGUGu-------GCGCCCUUgGugGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6486 0.69 0.361897
Target:  5'- cGCuCACGCGGGuacugcuGGCCcacaucgaccgacGCCgugCGCGCGACa -3'
miRNA:   3'- -CGuGUGCGCCC-------UUGG-------------UGG---GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 14205 0.69 0.355423
Target:  5'- aGCAgGC-CGGGAucaACUACCCGgCGCG-Cg -3'
miRNA:   3'- -CGUgUGcGCCCU---UGGUGGGC-GCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 4508 0.7 0.339597
Target:  5'- cCGCGC-CGGGAGugGCgCUGCGCGGCa -3'
miRNA:   3'- cGUGUGcGCCCUUggUG-GGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 5652 0.7 0.339597
Target:  5'- aGgACG-GCGGGcGCUACaCGCGCGACa -3'
miRNA:   3'- -CgUGUgCGCCCuUGGUGgGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 33884 1.11 0.000351
Target:  5'- aGCACACGCGGGAACCACCCGCGCGACg -3'
miRNA:   3'- -CGUGUGCGCCCUUGGUGGGCGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.