miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23261 3' -58.1 NC_005259.1 + 36499 0.67 0.570329
Target:  5'- gACGGGCAgcucuggcguguccuUGAAcCACCCGCgcggugugacACGCGGg- -3'
miRNA:   3'- -UGCUCGU---------------GCUU-GUGGGCG----------UGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 9896 0.67 0.566139
Target:  5'- cGCGcGCgACGAGCuuucgGCCCuCGCGCuGGUCa -3'
miRNA:   3'- -UGCuCG-UGCUUG-----UGGGcGUGCG-CCAG- -5'
23261 3' -58.1 NC_005259.1 + 18431 0.67 0.566139
Target:  5'- uACGcGCACGAcgccucgugcaACACCgCGCACaccgcCGGUCc -3'
miRNA:   3'- -UGCuCGUGCU-----------UGUGG-GCGUGc----GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 27378 0.67 0.566139
Target:  5'- cCG-GCACGGugACCgGCG-GCGGUg -3'
miRNA:   3'- uGCuCGUGCUugUGGgCGUgCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 32901 0.67 0.566139
Target:  5'- gGCGAGggUGAGCcacccgGCCCGCucggGCGCGG-Cg -3'
miRNA:   3'- -UGCUCguGCUUG------UGGGCG----UGCGCCaG- -5'
23261 3' -58.1 NC_005259.1 + 36058 0.67 0.566139
Target:  5'- cGCGAGCAC---CACCUGCugugugcucguCGCGGUg -3'
miRNA:   3'- -UGCUCGUGcuuGUGGGCGu----------GCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 67045 0.67 0.566139
Target:  5'- uCGAcgGCGAGCACCCGUGCGCcGaUCu -3'
miRNA:   3'- uGCUcgUGCUUGUGGGCGUGCGcC-AG- -5'
23261 3' -58.1 NC_005259.1 + 26574 0.67 0.566139
Target:  5'- cCGAGCACGA--ACuuGCGCGaggGGUUu -3'
miRNA:   3'- uGCUCGUGCUugUGggCGUGCg--CCAG- -5'
23261 3' -58.1 NC_005259.1 + 11320 0.67 0.555701
Target:  5'- gACGGGCGCGca-GCUCGU-CGuCGGUCa -3'
miRNA:   3'- -UGCUCGUGCuugUGGGCGuGC-GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 31906 0.67 0.555701
Target:  5'- cCG-GCGCGAGCGCCucaaucucgucaCGCAcuCGgGGUCg -3'
miRNA:   3'- uGCuCGUGCUUGUGG------------GCGU--GCgCCAG- -5'
23261 3' -58.1 NC_005259.1 + 9958 0.67 0.55466
Target:  5'- uCGAGC-CGAcCGCCCgaccaccGCAC-CGGUCg -3'
miRNA:   3'- uGCUCGuGCUuGUGGG-------CGUGcGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 42899 0.67 0.54532
Target:  5'- uUGAGCACGAGCucagaUCGUugGUGGcCu -3'
miRNA:   3'- uGCUCGUGCUUGug---GGCGugCGCCaG- -5'
23261 3' -58.1 NC_005259.1 + 33527 0.67 0.54532
Target:  5'- cCGAGguCGAcccACGCCUGCugaucguCGcCGGUCa -3'
miRNA:   3'- uGCUCguGCU---UGUGGGCGu------GC-GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 46152 0.67 0.544285
Target:  5'- gACGAGCAuguCGAAUaccgcuuGCCCGCcGgGCGcGUCg -3'
miRNA:   3'- -UGCUCGU---GCUUG-------UGGGCG-UgCGC-CAG- -5'
23261 3' -58.1 NC_005259.1 + 28979 0.67 0.535002
Target:  5'- cCGAGgcCGCGAGCGCCCGCua-CGGcCa -3'
miRNA:   3'- uGCUC--GUGCUUGUGGGCGugcGCCaG- -5'
23261 3' -58.1 NC_005259.1 + 63752 0.67 0.535002
Target:  5'- gGCGGGCACGAacaGCACaCCGUuguucaucACGCGuGa- -3'
miRNA:   3'- -UGCUCGUGCU---UGUG-GGCG--------UGCGC-Cag -5'
23261 3' -58.1 NC_005259.1 + 53661 0.68 0.524753
Target:  5'- uACGGGC-CGAG-GCCC-CACGCGGg- -3'
miRNA:   3'- -UGCUCGuGCUUgUGGGcGUGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 36238 0.68 0.524753
Target:  5'- gGCcAGCGCGAGCGCCUGCgucggcagcgccACGcCGGa- -3'
miRNA:   3'- -UGcUCGUGCUUGUGGGCG------------UGC-GCCag -5'
23261 3' -58.1 NC_005259.1 + 4290 0.68 0.51458
Target:  5'- cACGAGCACGGACcggcgGCCCuGCgaugaGCGCGa-- -3'
miRNA:   3'- -UGCUCGUGCUUG-----UGGG-CG-----UGCGCcag -5'
23261 3' -58.1 NC_005259.1 + 65985 0.68 0.504488
Target:  5'- gGCGcGC-CGAGCAgCCGCucgACGUGGUg -3'
miRNA:   3'- -UGCuCGuGCUUGUgGGCG---UGCGCCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.