Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23261 | 5' | -53.2 | NC_005259.1 | + | 50853 | 0.66 | 0.857923 |
Target: 5'- gGGGCCACGcGAGGcagaUUGCaAUCGAUg -3' miRNA: 3'- aCUUGGUGCaCUCC----AGCGgUAGCUAg -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 27216 | 0.66 | 0.849527 |
Target: 5'- cGAGCUcgGUGAGcGggccgaaaUCGCCAUCGAUUu -3' miRNA: 3'- aCUUGGugCACUC-C--------AGCGGUAGCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 2734 | 0.67 | 0.80432 |
Target: 5'- --cACCACcgaugccGAGGUCGCCGUCGu-- -3' miRNA: 3'- acuUGGUGca-----CUCCAGCGGUAGCuag -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 28648 | 0.67 | 0.813761 |
Target: 5'- cGAcACCGCc-GAGGcCGCCGUCaaGAUCa -3' miRNA: 3'- aCU-UGGUGcaCUCCaGCGGUAG--CUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 54071 | 0.67 | 0.823012 |
Target: 5'- uUGucCUGCGUGAGGUCGguggCGUCGcgCa -3' miRNA: 3'- -ACuuGGUGCACUCCAGCg---GUAGCuaG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 8917 | 0.67 | 0.823012 |
Target: 5'- cGGGCCGCGUucuGGGcUCGuUUGUCGAUCa -3' miRNA: 3'- aCUUGGUGCAc--UCC-AGC-GGUAGCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 48644 | 0.67 | 0.823012 |
Target: 5'- cGGGCUGCcaGAucGUCGCCAUUGAUCu -3' miRNA: 3'- aCUUGGUGcaCUc-CAGCGGUAGCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 33593 | 0.67 | 0.832063 |
Target: 5'- cGGGCCACc-GAGG-CGCgGUCGAg- -3' miRNA: 3'- aCUUGGUGcaCUCCaGCGgUAGCUag -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 64414 | 0.68 | 0.794699 |
Target: 5'- cGAugCAgcCGUGAGGgaUCGCCGaCGAg- -3' miRNA: 3'- aCUugGU--GCACUCC--AGCGGUaGCUag -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 27894 | 0.68 | 0.794699 |
Target: 5'- cGAuCCACcUGGGGUCGCCGagacCGcgCg -3' miRNA: 3'- aCUuGGUGcACUCCAGCGGUa---GCuaG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 57965 | 0.69 | 0.733812 |
Target: 5'- ---cCCAUGgucGAGGUCGCCGg-GAUCg -3' miRNA: 3'- acuuGGUGCa--CUCCAGCGGUagCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 8685 | 0.69 | 0.701842 |
Target: 5'- gGGGCCGCcucgaugucgcuGUcGAGGUCGUCG-CGGUCa -3' miRNA: 3'- aCUUGGUG------------CA-CUCCAGCGGUaGCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 40033 | 0.71 | 0.57073 |
Target: 5'- gUGAugCuu-UGAGGUCGCCggUGAUCg -3' miRNA: 3'- -ACUugGugcACUCCAGCGGuaGCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 5900 | 0.71 | 0.581594 |
Target: 5'- -cGACCACGUcGAGGUCGaggugcugcgcaCCGUCGAc- -3' miRNA: 3'- acUUGGUGCA-CUCCAGC------------GGUAGCUag -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 66426 | 0.71 | 0.603441 |
Target: 5'- cGAaccGCCACGUGAugacGGUCucgaaaguGCCGUCGAacUCg -3' miRNA: 3'- aCU---UGGUGCACU----CCAG--------CGGUAGCU--AG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 9564 | 0.71 | 0.625384 |
Target: 5'- -cGACCGCGUcggcGAGGUgcucgucaaCGUCGUCGGUCu -3' miRNA: 3'- acUUGGUGCA----CUCCA---------GCGGUAGCUAG- -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 56302 | 0.72 | 0.549158 |
Target: 5'- -aGACCACGUGGccggacccucGUCGCCGUCGAg- -3' miRNA: 3'- acUUGGUGCACUc---------CAGCGGUAGCUag -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 40361 | 0.74 | 0.446212 |
Target: 5'- aUGAACCGCGccgagggcaUGAGGUCuuCCAUCGAc- -3' miRNA: 3'- -ACUUGGUGC---------ACUCCAGc-GGUAGCUag -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 39927 | 0.76 | 0.322294 |
Target: 5'- aGGGCCGCGUcGAGGUCGUCcUUGGUg -3' miRNA: 3'- aCUUGGUGCA-CUCCAGCGGuAGCUAg -5' |
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23261 | 5' | -53.2 | NC_005259.1 | + | 33791 | 1.11 | 0.001645 |
Target: 5'- uUGAACCACGUGAGGUCGCCAUCGAUCa -3' miRNA: 3'- -ACUUGGUGCACUCCAGCGGUAGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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