Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 912 | 0.72 | 0.168359 |
Target: 5'- uGGUGCCCGGCgaUCACCugcugCUGcGCGACa -3' miRNA: 3'- cCCACGGGCCG--GGUGG-----GACaCGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 2225 | 0.67 | 0.337916 |
Target: 5'- ---cGCCCGGCCuCGCCauuUGUcgGCGACa -3' miRNA: 3'- cccaCGGGCCGG-GUGGg--ACA--CGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 7310 | 0.66 | 0.411041 |
Target: 5'- uGGGUGCCCGaGUUCACCgCcGU-CG-CCg -3' miRNA: 3'- -CCCACGGGC-CGGGUGG-GaCAcGCuGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 8138 | 0.69 | 0.268315 |
Target: 5'- cGGGUGcCCCGcGCCCucguuGCUCUG-GCcauGGCCu -3' miRNA: 3'- -CCCAC-GGGC-CGGG-----UGGGACaCG---CUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 8286 | 0.66 | 0.386424 |
Target: 5'- cGGGUGCgCgGGCacccgcacggaaacgCCGCCUUGUcggagcugccgacgGCGAUCa -3' miRNA: 3'- -CCCACG-GgCCG---------------GGUGGGACA--------------CGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 9794 | 0.72 | 0.15483 |
Target: 5'- cGGuGUGCCCGcucgcgccacuaccGCCCGCaCCgccggGUGCGGCg -3' miRNA: 3'- -CC-CACGGGC--------------CGGGUG-GGa----CACGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 13095 | 0.73 | 0.140837 |
Target: 5'- cGGUGCCaccgacccCGGCCCGCUCg--GCGGCUa -3' miRNA: 3'- cCCACGG--------GCCGGGUGGGacaCGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 15049 | 0.69 | 0.28125 |
Target: 5'- aGGGUGCCaUGGCcgauaccguggCCACCCUG-GCccuugaGCCg -3' miRNA: 3'- -CCCACGG-GCCG-----------GGUGGGACaCGc-----UGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 15640 | 0.71 | 0.190877 |
Target: 5'- aGGacGCCCGuCCgAUCCUGUGCGACg -3' miRNA: 3'- cCCa-CGGGCcGGgUGGGACACGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 20350 | 0.66 | 0.419753 |
Target: 5'- cGGGcgGUacuaCGcGUCCACCUcGUGCGACg -3' miRNA: 3'- -CCCa-CGg---GC-CGGGUGGGaCACGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 22377 | 0.67 | 0.345556 |
Target: 5'- aGGGcaaaaGCCCGGUCgGCCUcG-GCGACg -3' miRNA: 3'- -CCCa----CGGGCCGGgUGGGaCaCGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 22843 | 0.71 | 0.195687 |
Target: 5'- ---gGCCCGGCCCACCCgcagccGCaACCu -3' miRNA: 3'- cccaCGGGCCGGGUGGGaca---CGcUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 23638 | 0.67 | 0.330399 |
Target: 5'- cGGUGUgguuUCGGCCCGCCgacgGCGACg -3' miRNA: 3'- cCCACG----GGCCGGGUGGgacaCGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 24813 | 0.66 | 0.411041 |
Target: 5'- aGGUGcCCCGGCaCGCCgUGcccgcacCGACCa -3' miRNA: 3'- cCCAC-GGGCCGgGUGGgACac-----GCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 25951 | 0.8 | 0.047473 |
Target: 5'- cGGUGCCCGGCCCGCcgacgCCUGcGaugaGACCg -3' miRNA: 3'- cCCACGGGCCGGGUG-----GGACaCg---CUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 26160 | 0.72 | 0.177066 |
Target: 5'- ---aGCCCGaaaauGCCCGCguCCUGUGCGAUCu -3' miRNA: 3'- cccaCGGGC-----CGGGUG--GGACACGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 30820 | 0.67 | 0.35332 |
Target: 5'- cGGGUaGUCCGGCgCGCCgaGgucgGCaACCu -3' miRNA: 3'- -CCCA-CGGGCCGgGUGGgaCa---CGcUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 32905 | 0.75 | 0.103082 |
Target: 5'- aGGGUGagccaCCCGGCCCGCUCggGcGCGGCg -3' miRNA: 3'- -CCCAC-----GGGCCGGGUGGGa-CaCGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 33666 | 1.13 | 0.000139 |
Target: 5'- aGGGUGCCCGGCCCACCCUGUGCGACCa -3' miRNA: 3'- -CCCACGGGCCGGGUGGGACACGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 36954 | 0.66 | 0.385592 |
Target: 5'- gGGGUGCCCGcGagaCCGCCU----CGGCCc -3' miRNA: 3'- -CCCACGGGC-Cg--GGUGGGacacGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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