miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 27186 0.68 0.467144
Target:  5'- nCAGGCugCGACGCuggaaCUCccGCACCgcGAGCu -3'
miRNA:   3'- -GUCUGugGCUGCG-----GAGc-CGUGG--CUCG- -5'
23264 3' -59 NC_005259.1 + 16447 0.68 0.45762
Target:  5'- cCGGGCACCGuCGgCaUCGGUACCccGCc -3'
miRNA:   3'- -GUCUGUGGCuGCgG-AGCCGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 5193 0.68 0.45762
Target:  5'- -cGACGCCGcCGCCaagcucacCGcGCucGCCGAGCa -3'
miRNA:   3'- guCUGUGGCuGCGGa-------GC-CG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 66856 0.68 0.448201
Target:  5'- aCGGGcCACCGAUcgGCCUUGuucGCACCGcGCc -3'
miRNA:   3'- -GUCU-GUGGCUG--CGGAGC---CGUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 51740 0.68 0.448201
Target:  5'- uGGcCACCGccACGCuCUCGGCAgCGuuGCg -3'
miRNA:   3'- gUCuGUGGC--UGCG-GAGCCGUgGCu-CG- -5'
23264 3' -59 NC_005259.1 + 61070 0.68 0.467144
Target:  5'- cCGGGCAUCGgcauagGCGUCgUCGGCcUCGGGCu -3'
miRNA:   3'- -GUCUGUGGC------UGCGG-AGCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 45848 0.69 0.402792
Target:  5'- ---cCACCGGgGCCggUGGgACCGGGCa -3'
miRNA:   3'- gucuGUGGCUgCGGa-GCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 20409 0.69 0.420607
Target:  5'- aGGGCAUCGAgGUCUaccCGGuCACCGAcGCc -3'
miRNA:   3'- gUCUGUGGCUgCGGA---GCC-GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 41479 0.69 0.402792
Target:  5'- -uGACGCCGucgagcACGaCCUCGGCGguggCGGGCa -3'
miRNA:   3'- guCUGUGGC------UGC-GGAGCCGUg---GCUCG- -5'
23264 3' -59 NC_005259.1 + 45600 0.69 0.406316
Target:  5'- cCAG-CACCGACaG-CUCGGUcucgaugcccgccggGCCGGGCa -3'
miRNA:   3'- -GUCuGUGGCUG-CgGAGCCG---------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 28955 0.69 0.438891
Target:  5'- --uGCGCCGcauCGCCgaggUCGGUGCCGAGg -3'
miRNA:   3'- gucUGUGGCu--GCGG----AGCCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 66949 0.69 0.437966
Target:  5'- gGGACACCGGCGagcuguuUCUUGcGCGCCucGCg -3'
miRNA:   3'- gUCUGUGGCUGC-------GGAGC-CGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 51982 0.69 0.429692
Target:  5'- cCAGAaucauCACCGACGCCgaucucgacCGGaUGCaCGAGCg -3'
miRNA:   3'- -GUCU-----GUGGCUGCGGa--------GCC-GUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 29784 0.69 0.420607
Target:  5'- gAGGCAcccCCGGUGCCUCGGUACCucAGUc -3'
miRNA:   3'- gUCUGU---GGCUGCGGAGCCGUGGc-UCG- -5'
23264 3' -59 NC_005259.1 + 7855 0.69 0.429692
Target:  5'- aCGGACcgcGCCGACcCCggUGGC-CCGAGUg -3'
miRNA:   3'- -GUCUG---UGGCUGcGGa-GCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 18349 0.69 0.420607
Target:  5'- -cGACGCCGACGgCgacaugUGGCACaugcccgaGGGCg -3'
miRNA:   3'- guCUGUGGCUGCgGa-----GCCGUGg-------CUCG- -5'
23264 3' -59 NC_005259.1 + 32275 0.69 0.419705
Target:  5'- uGGGCACgccaugauguuggUGAUGCCUUGGC-CCaGAGCc -3'
miRNA:   3'- gUCUGUG-------------GCUGCGGAGCCGuGG-CUCG- -5'
23264 3' -59 NC_005259.1 + 26338 0.7 0.376984
Target:  5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3'
miRNA:   3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 43571 0.7 0.376984
Target:  5'- -cGACACCGAUGaCCUUGaGCAgcacucggaCGAGCa -3'
miRNA:   3'- guCUGUGGCUGC-GGAGC-CGUg--------GCUCG- -5'
23264 3' -59 NC_005259.1 + 27383 0.7 0.376984
Target:  5'- aCGGugACCGGCGgCggugUCGGCAgCG-GCg -3'
miRNA:   3'- -GUCugUGGCUGCgG----AGCCGUgGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.