miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 45520 0.7 0.359593
Target:  5'- --cGCGCCGGuguuggcCGCCgUGGCugCGAGCg -3'
miRNA:   3'- gucUGUGGCU-------GCGGaGCCGugGCUCG- -5'
23264 3' -59 NC_005259.1 + 11005 0.7 0.352313
Target:  5'- -cGGCACCG-CGCCggacGCGCCGAGg -3'
miRNA:   3'- guCUGUGGCuGCGGagc-CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 25957 0.7 0.351511
Target:  5'- cCGGccCGCCGACGCCUgCGaugagaccgggcaGCGCCGAGg -3'
miRNA:   3'- -GUCu-GUGGCUGCGGA-GC-------------CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 26338 0.7 0.376984
Target:  5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3'
miRNA:   3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 43571 0.7 0.376984
Target:  5'- -cGACACCGAUGaCCUUGaGCAgcacucggaCGAGCa -3'
miRNA:   3'- guCUGUGGCUGC-GGAGC-CGUg--------GCUCG- -5'
23264 3' -59 NC_005259.1 + 27383 0.7 0.376984
Target:  5'- aCGGugACCGGCGgCggugUCGGCAgCG-GCg -3'
miRNA:   3'- -GUCugUGGCUGCgG----AGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 27160 0.7 0.385462
Target:  5'- gGGGCcaaCGAUGCCgUCGGCGauGAGCa -3'
miRNA:   3'- gUCUGug-GCUGCGG-AGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 3860 0.7 0.385462
Target:  5'- -cGACGCCGgucgaGCGCCUCGaGCccaccCCGcAGCg -3'
miRNA:   3'- guCUGUGGC-----UGCGGAGC-CGu----GGC-UCG- -5'
23264 3' -59 NC_005259.1 + 56270 0.7 0.385462
Target:  5'- --aGCGCCGcCGCCcggcccguaUCGGCACC-AGCa -3'
miRNA:   3'- gucUGUGGCuGCGG---------AGCCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 21229 0.7 0.394065
Target:  5'- ----aGCCGAguaCGCCUCGGCAgCGcGCg -3'
miRNA:   3'- gucugUGGCU---GCGGAGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 60201 0.7 0.394065
Target:  5'- cCGGGCcacgaucucGCCGAUcuCgUCGGCGCUGAGCu -3'
miRNA:   3'- -GUCUG---------UGGCUGc-GgAGCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 47301 0.71 0.321235
Target:  5'- cCGGACAgCGACcCCUUGGCcugACCG-GCg -3'
miRNA:   3'- -GUCUGUgGCUGcGGAGCCG---UGGCuCG- -5'
23264 3' -59 NC_005259.1 + 59102 0.71 0.321235
Target:  5'- -uGACGuuGAUGUCagcacgcgCGGCAUCGAGCa -3'
miRNA:   3'- guCUGUggCUGCGGa-------GCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 26113 0.71 0.334188
Target:  5'- gCAGAcCGCCGcCGCCggucgcCGGUccgacgccgccgagGCCGAGCa -3'
miRNA:   3'- -GUCU-GUGGCuGCGGa-----GCCG--------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 59385 0.72 0.299303
Target:  5'- --cGCACCG-UGCCUCcGCGCgCGAGCg -3'
miRNA:   3'- gucUGUGGCuGCGGAGcCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 23305 0.72 0.299303
Target:  5'- uCGGGguCCGGCGCggUCGGUgucGCCGAGCc -3'
miRNA:   3'- -GUCUguGGCUGCGg-AGCCG---UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 30763 0.72 0.278548
Target:  5'- --cAUGCCGACGCCggUGGCACCGcuGCc -3'
miRNA:   3'- gucUGUGGCUGCGGa-GCCGUGGCu-CG- -5'
23264 3' -59 NC_005259.1 + 15208 0.73 0.228819
Target:  5'- -uGAUGCUGugGCgCUCGGCGCUcGGCa -3'
miRNA:   3'- guCUGUGGCugCG-GAGCCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 17760 0.73 0.258955
Target:  5'- gAGGcCGCCGcGCGCCgggccgaGcGCACCGAGCg -3'
miRNA:   3'- gUCU-GUGGC-UGCGGag-----C-CGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 30362 0.73 0.252679
Target:  5'- uGGACGCCGAucugcccgcUGCC-CGGCgagaaACCGGGCc -3'
miRNA:   3'- gUCUGUGGCU---------GCGGaGCCG-----UGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.