Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 15208 | 0.73 | 0.228819 |
Target: 5'- -uGAUGCUGugGCgCUCGGCGCUcGGCa -3' miRNA: 3'- guCUGUGGCugCG-GAGCCGUGGcUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 68276 | 0.73 | 0.228248 |
Target: 5'- gUAGGCACCGuccuCGCCccauacaUCGGgAUCGGGCg -3' miRNA: 3'- -GUCUGUGGCu---GCGG-------AGCCgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 61161 | 0.73 | 0.228248 |
Target: 5'- aGGACACCGAcgguguaCGCCUCGGUauggcccucGCCGGucuGCu -3' miRNA: 3'- gUCUGUGGCU-------GCGGAGCCG---------UGGCU---CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 10081 | 0.74 | 0.206368 |
Target: 5'- aGGACGCCGACGaguagacCCcgaGGcCACCGAGCu -3' miRNA: 3'- gUCUGUGGCUGC-------GGag-CC-GUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 66244 | 0.74 | 0.196625 |
Target: 5'- gCAGcCAUCGACGCagcgCGGCccgcGCCGGGCg -3' miRNA: 3'- -GUCuGUGGCUGCGga--GCCG----UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 7176 | 0.75 | 0.182059 |
Target: 5'- aGGGCACCGGCgagugcccgGCCUgCGgacGCACCGGGCu -3' miRNA: 3'- gUCUGUGGCUG---------CGGA-GC---CGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 44275 | 0.76 | 0.155772 |
Target: 5'- -cGAgGCCGaACGCCUUGGCcaGCgCGAGCg -3' miRNA: 3'- guCUgUGGC-UGCGGAGCCG--UG-GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 50668 | 0.76 | 0.147802 |
Target: 5'- aGGGCACCaGCGCgUCGGUGCCGAcgagGCg -3' miRNA: 3'- gUCUGUGGcUGCGgAGCCGUGGCU----CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 40339 | 0.77 | 0.136542 |
Target: 5'- cCGGACACCucGCGCCUCGaugaugaaccGCGCCGAGg -3' miRNA: 3'- -GUCUGUGGc-UGCGGAGC----------CGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 63663 | 0.77 | 0.129479 |
Target: 5'- gGGACGCCgGACaCCUCgGGCACCGGcGCg -3' miRNA: 3'- gUCUGUGG-CUGcGGAG-CCGUGGCU-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 32608 | 0.78 | 0.119516 |
Target: 5'- aGGACGCCGACacCCUCGaCAUCGAGCu -3' miRNA: 3'- gUCUGUGGCUGc-GGAGCcGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8383 | 0.79 | 0.098982 |
Target: 5'- -cGGCAUCGGCgagaGCCUCGGCgaGCCGGGCc -3' miRNA: 3'- guCUGUGGCUG----CGGAGCCG--UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 32216 | 1.1 | 0.00053 |
Target: 5'- uCAGACACCGACGCCUCGGCACCGAGCu -3' miRNA: 3'- -GUCUGUGGCUGCGGAGCCGUGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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