miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 29784 0.69 0.420607
Target:  5'- gAGGCAcccCCGGUGCCUCGGUACCucAGUc -3'
miRNA:   3'- gUCUGU---GGCUGCGGAGCCGUGGc-UCG- -5'
23264 3' -59 NC_005259.1 + 18349 0.69 0.420607
Target:  5'- -cGACGCCGACGgCgacaugUGGCACaugcccgaGGGCg -3'
miRNA:   3'- guCUGUGGCUGCgGa-----GCCGUGg-------CUCG- -5'
23264 3' -59 NC_005259.1 + 20409 0.69 0.420607
Target:  5'- aGGGCAUCGAgGUCUaccCGGuCACCGAcGCc -3'
miRNA:   3'- gUCUGUGGCUgCGGA---GCC-GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 32275 0.69 0.419705
Target:  5'- uGGGCACgccaugauguuggUGAUGCCUUGGC-CCaGAGCc -3'
miRNA:   3'- gUCUGUG-------------GCUGCGGAGCCGuGG-CUCG- -5'
23264 3' -59 NC_005259.1 + 45600 0.69 0.406316
Target:  5'- cCAG-CACCGACaG-CUCGGUcucgaugcccgccggGCCGGGCa -3'
miRNA:   3'- -GUCuGUGGCUG-CgGAGCCG---------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 41479 0.69 0.402792
Target:  5'- -uGACGCCGucgagcACGaCCUCGGCGguggCGGGCa -3'
miRNA:   3'- guCUGUGGC------UGC-GGAGCCGUg---GCUCG- -5'
23264 3' -59 NC_005259.1 + 45848 0.69 0.402792
Target:  5'- ---cCACCGGgGCCggUGGgACCGGGCa -3'
miRNA:   3'- gucuGUGGCUgCGGa-GCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 61070 0.68 0.467144
Target:  5'- cCGGGCAUCGgcauagGCGUCgUCGGCcUCGGGCu -3'
miRNA:   3'- -GUCUGUGGC------UGCGG-AGCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 43931 0.68 0.476769
Target:  5'- -cGACACCG-CGCUacugacagcgUCGGCGauGGGCg -3'
miRNA:   3'- guCUGUGGCuGCGG----------AGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 6422 0.68 0.476769
Target:  5'- -uGGC-CCGAccuCGCCgaugUCGGCACCGucGCg -3'
miRNA:   3'- guCUGuGGCU---GCGG----AGCCGUGGCu-CG- -5'
23264 3' -59 NC_005259.1 + 44750 0.68 0.476769
Target:  5'- --cGCGCCGAgGCuCUUGaGCACCGAucccGCa -3'
miRNA:   3'- gucUGUGGCUgCG-GAGC-CGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 29398 0.68 0.486491
Target:  5'- --uACACCGAgGgCCUCGGCGagcUCGuGCg -3'
miRNA:   3'- gucUGUGGCUgC-GGAGCCGU---GGCuCG- -5'
23264 3' -59 NC_005259.1 + 27186 0.68 0.467144
Target:  5'- nCAGGCugCGACGCuggaaCUCccGCACCgcGAGCu -3'
miRNA:   3'- -GUCUGugGCUGCG-----GAGc-CGUGG--CUCG- -5'
23264 3' -59 NC_005259.1 + 16667 0.68 0.464276
Target:  5'- gGGugACCGccucgauguggucgGCGauCCUgGGCACCGAGg -3'
miRNA:   3'- gUCugUGGC--------------UGC--GGAgCCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 16447 0.68 0.45762
Target:  5'- cCGGGCACCGuCGgCaUCGGUACCccGCc -3'
miRNA:   3'- -GUCUGUGGCuGCgG-AGCCGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 5193 0.68 0.45762
Target:  5'- -cGACGCCGcCGCCaagcucacCGcGCucGCCGAGCa -3'
miRNA:   3'- guCUGUGGCuGCGGa-------GC-CG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 3536 0.68 0.45762
Target:  5'- -cGACACCGACcacaGCCagauccgCGaGCuuGCCGAGCu -3'
miRNA:   3'- guCUGUGGCUG----CGGa------GC-CG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 66856 0.68 0.448201
Target:  5'- aCGGGcCACCGAUcgGCCUUGuucGCACCGcGCc -3'
miRNA:   3'- -GUCU-GUGGCUG--CGGAGC---CGUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 51740 0.68 0.448201
Target:  5'- uGGcCACCGccACGCuCUCGGCAgCGuuGCg -3'
miRNA:   3'- gUCuGUGGC--UGCG-GAGCCGUgGCu-CG- -5'
23264 3' -59 NC_005259.1 + 36851 0.68 0.448201
Target:  5'- -uGACGCCGcccgcuGCGCCguugcUGGCACCGcccGCg -3'
miRNA:   3'- guCUGUGGC------UGCGGa----GCCGUGGCu--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.