Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 46297 | 0.67 | 0.516197 |
Target: 5'- gGGGcCGCCGugGCUgcguuguucgCGGCcCCGAGg -3' miRNA: 3'- gUCU-GUGGCugCGGa---------GCCGuGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26797 | 0.67 | 0.516197 |
Target: 5'- cCAG-CGCCGcCGCCcgguuggcCGGUACCG-GCg -3' miRNA: 3'- -GUCuGUGGCuGCGGa-------GCCGUGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 68170 | 0.67 | 0.526262 |
Target: 5'- uGGACGCgCG-CGCUUUGGCAgcUCGcAGCg -3' miRNA: 3'- gUCUGUG-GCuGCGGAGCCGU--GGC-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8512 | 0.67 | 0.526262 |
Target: 5'- cCAGACGCagcgagcaCGACaGCCaaUCGGCGauGAGCu -3' miRNA: 3'- -GUCUGUG--------GCUG-CGG--AGCCGUggCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 12501 | 0.67 | 0.536401 |
Target: 5'- uCAGGCguaGCCGcuGgGCCgcUCGGCuacccguagaGCCGAGCg -3' miRNA: 3'- -GUCUG---UGGC--UgCGG--AGCCG----------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6301 | 0.67 | 0.536401 |
Target: 5'- gCGG-UACCGAUGUCgaCGGCaugaccuaccuuGCCGGGCa -3' miRNA: 3'- -GUCuGUGGCUGCGGa-GCCG------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 40072 | 0.66 | 0.577563 |
Target: 5'- -uGACccauggGCCGACGC----GCACCGAGCg -3' miRNA: 3'- guCUG------UGGCUGCGgagcCGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 52131 | 0.66 | 0.577563 |
Target: 5'- --cGCACCGcCGUC-CGGCACCucGCc -3' miRNA: 3'- gucUGUGGCuGCGGaGCCGUGGcuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 37353 | 0.66 | 0.581723 |
Target: 5'- gGGuuGCCGcugugcgaguagcucACGcCCUCGGCACCGcccGCc -3' miRNA: 3'- gUCugUGGC---------------UGC-GGAGCCGUGGCu--CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 34004 | 0.66 | 0.587974 |
Target: 5'- gAGcuGCaACCGGCuguauccgGCCUCGGCGgCGuGCg -3' miRNA: 3'- gUC--UG-UGGCUG--------CGGAGCCGUgGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 24226 | 0.66 | 0.587974 |
Target: 5'- -cGugACCGGCgggGCCgaGGCACgCGAGUu -3' miRNA: 3'- guCugUGGCUG---CGGagCCGUG-GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 64768 | 0.66 | 0.587974 |
Target: 5'- -cGACGgUG-CGCCUCGGCGgcCCGcuGCg -3' miRNA: 3'- guCUGUgGCuGCGGAGCCGU--GGCu-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 38442 | 0.66 | 0.577563 |
Target: 5'- -cGAgACCGAaaaUGCCgugcgagGGCACCGAGg -3' miRNA: 3'- guCUgUGGCU---GCGGag-----CCGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6518 | 0.66 | 0.577563 |
Target: 5'- -cGACGCCGuGCgcgcgacaaccgGCCUCGGgG-CGAGCg -3' miRNA: 3'- guCUGUGGC-UG------------CGGAGCCgUgGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8965 | 0.66 | 0.567194 |
Target: 5'- aCGGGCACCG-UGCCgggacguaGGUGCC-AGCg -3' miRNA: 3'- -GUCUGUGGCuGCGGag------CCGUGGcUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 50021 | 0.66 | 0.567194 |
Target: 5'- aCGGGCgcugcguaauccGCUGugGCCUCGaCACCGccccGCa -3' miRNA: 3'- -GUCUG------------UGGCugCGGAGCcGUGGCu---CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 34746 | 0.66 | 0.567194 |
Target: 5'- uGGugAUCGuGCGCCaaUUGGCAUCGucGGCg -3' miRNA: 3'- gUCugUGGC-UGCGG--AGCCGUGGC--UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 35197 | 0.66 | 0.567194 |
Target: 5'- gCAG-CACCGugcCGCCUgaGGCGgCGAGg -3' miRNA: 3'- -GUCuGUGGCu--GCGGAg-CCGUgGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 20166 | 0.66 | 0.567194 |
Target: 5'- uGGcCACCGcgcccgcCGCCUCGGCugaCGAGa -3' miRNA: 3'- gUCuGUGGCu------GCGGAGCCGug-GCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 55603 | 0.66 | 0.619376 |
Target: 5'- -cGAUACC-ACGUCUCGcGCGCCuuGGCc -3' miRNA: 3'- guCUGUGGcUGCGGAGC-CGUGGc-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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