Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 57112 | 0.67 | 0.505215 |
Target: 5'- --uGCGCUGAucguccuCGCCcaUCGGCgggACCGAGCa -3' miRNA: 3'- gucUGUGGCU-------GCGG--AGCCG---UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 51337 | 0.67 | 0.506209 |
Target: 5'- aGGAUGCCGGugagcucggauaUGCCcggUGGCACCG-GCa -3' miRNA: 3'- gUCUGUGGCU------------GCGGa--GCCGUGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 63247 | 0.67 | 0.506209 |
Target: 5'- uCAGAC-CCGACGCgUCG-UACCaGAGg -3' miRNA: 3'- -GUCUGuGGCUGCGgAGCcGUGG-CUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 54141 | 0.67 | 0.506209 |
Target: 5'- cCAGACGguuUCGAgGCC-CGGCGauGGGCa -3' miRNA: 3'- -GUCUGU---GGCUgCGGaGCCGUggCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 46763 | 0.67 | 0.506209 |
Target: 5'- -cGACACCuGCGCCgacagcCGcGCccGCCGGGCc -3' miRNA: 3'- guCUGUGGcUGCGGa-----GC-CG--UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 12334 | 0.67 | 0.506209 |
Target: 5'- cCAGcucacGCACCGcCGCCUCGaaACCG-GCc -3' miRNA: 3'- -GUC-----UGUGGCuGCGGAGCcgUGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 46297 | 0.67 | 0.516197 |
Target: 5'- gGGGcCGCCGugGCUgcguuguucgCGGCcCCGAGg -3' miRNA: 3'- gUCU-GUGGCugCGGa---------GCCGuGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26797 | 0.67 | 0.516197 |
Target: 5'- cCAG-CGCCGcCGCCcgguuggcCGGUACCG-GCg -3' miRNA: 3'- -GUCuGUGGCuGCGGa-------GCCGUGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 68170 | 0.67 | 0.526262 |
Target: 5'- uGGACGCgCG-CGCUUUGGCAgcUCGcAGCg -3' miRNA: 3'- gUCUGUG-GCuGCGGAGCCGU--GGC-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8512 | 0.67 | 0.526262 |
Target: 5'- cCAGACGCagcgagcaCGACaGCCaaUCGGCGauGAGCu -3' miRNA: 3'- -GUCUGUG--------GCUG-CGG--AGCCGUggCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 62861 | 0.67 | 0.536401 |
Target: 5'- gCAGcCGCuCGGCGCgagguaggccgCUCGGuCAUUGAGCg -3' miRNA: 3'- -GUCuGUG-GCUGCG-----------GAGCC-GUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 68416 | 0.67 | 0.536401 |
Target: 5'- gUAGACcUUGACGCCUCGcGCggGCCGGu- -3' miRNA: 3'- -GUCUGuGGCUGCGGAGC-CG--UGGCUcg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 50409 | 0.67 | 0.536401 |
Target: 5'- gAGcGCGCCGGUGCCUugacCGGC-UCGGGCa -3' miRNA: 3'- gUC-UGUGGCUGCGGA----GCCGuGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 20490 | 0.67 | 0.536401 |
Target: 5'- -cGACACCGcccgGCaGCUcaUCGGCGacggugucCCGAGCa -3' miRNA: 3'- guCUGUGGC----UG-CGG--AGCCGU--------GGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6301 | 0.67 | 0.536401 |
Target: 5'- gCGG-UACCGAUGUCgaCGGCaugaccuaccuuGCCGGGCa -3' miRNA: 3'- -GUCuGUGGCUGCGGa-GCCG------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 12501 | 0.67 | 0.536401 |
Target: 5'- uCAGGCguaGCCGcuGgGCCgcUCGGCuacccguagaGCCGAGCg -3' miRNA: 3'- -GUCUG---UGGC--UgCGG--AGCCG----------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 23005 | 0.67 | 0.546606 |
Target: 5'- gAGGuCACCGAggaCGgCUCGGuCAUCGAGa -3' miRNA: 3'- gUCU-GUGGCU---GCgGAGCC-GUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 58746 | 0.67 | 0.546606 |
Target: 5'- -cGGCACCGGCGaagUUCGGCGaacgacgcugCGGGCg -3' miRNA: 3'- guCUGUGGCUGCg--GAGCCGUg---------GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 58859 | 0.67 | 0.546606 |
Target: 5'- uCGGGCucGCCGucgucgucguCGCCUCGGCAUCGc-- -3' miRNA: 3'- -GUCUG--UGGCu---------GCGGAGCCGUGGCucg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 45741 | 0.67 | 0.550706 |
Target: 5'- -cGAgGCCGcgcacCGCCUCGGggaugagcacgcccuCGCCGGGUg -3' miRNA: 3'- guCUgUGGCu----GCGGAGCC---------------GUGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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