miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 5836 0.67 0.553787
Target:  5'- gAGACcagaacgugcgcauGCuCGuCGCCUCGGUGCuccaCGAGCa -3'
miRNA:   3'- gUCUG--------------UG-GCuGCGGAGCCGUG----GCUCG- -5'
23264 3' -59 NC_005259.1 + 44999 0.67 0.556873
Target:  5'- gAGGCACCGcCGaCCgcCGGgGCCGcGCc -3'
miRNA:   3'- gUCUGUGGCuGC-GGa-GCCgUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 36222 0.67 0.556873
Target:  5'- -cGAUGCCGAgCaCCUUGGCcaGCgCGAGCg -3'
miRNA:   3'- guCUGUGGCU-GcGGAGCCG--UG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 22698 0.67 0.556873
Target:  5'- ---cCGCCGuCGCCgucacCGGCucgaugagcuacGCCGAGCg -3'
miRNA:   3'- gucuGUGGCuGCGGa----GCCG------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 8481 0.67 0.556873
Target:  5'- --aGCACCG-CGCUgUCGGCACUGAu- -3'
miRNA:   3'- gucUGUGGCuGCGG-AGCCGUGGCUcg -5'
23264 3' -59 NC_005259.1 + 14326 0.67 0.556873
Target:  5'- -cGACGCCGcCGCCcgcgugCGGgcCGCCGAcGCc -3'
miRNA:   3'- guCUGUGGCuGCGGa-----GCC--GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 8965 0.66 0.567194
Target:  5'- aCGGGCACCG-UGCCgggacguaGGUGCC-AGCg -3'
miRNA:   3'- -GUCUGUGGCuGCGGag------CCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 50021 0.66 0.567194
Target:  5'- aCGGGCgcugcguaauccGCUGugGCCUCGaCACCGccccGCa -3'
miRNA:   3'- -GUCUG------------UGGCugCGGAGCcGUGGCu---CG- -5'
23264 3' -59 NC_005259.1 + 34746 0.66 0.567194
Target:  5'- uGGugAUCGuGCGCCaaUUGGCAUCGucGGCg -3'
miRNA:   3'- gUCugUGGC-UGCGG--AGCCGUGGC--UCG- -5'
23264 3' -59 NC_005259.1 + 35197 0.66 0.567194
Target:  5'- gCAG-CACCGugcCGCCUgaGGCGgCGAGg -3'
miRNA:   3'- -GUCuGUGGCu--GCGGAg-CCGUgGCUCg -5'
23264 3' -59 NC_005259.1 + 20166 0.66 0.567194
Target:  5'- uGGcCACCGcgcccgcCGCCUCGGCugaCGAGa -3'
miRNA:   3'- gUCuGUGGCu------GCGGAGCCGug-GCUCg -5'
23264 3' -59 NC_005259.1 + 12044 0.66 0.567194
Target:  5'- cCGGuacuCACCGAgGCCgagcucugCGGCagacACCGAGa -3'
miRNA:   3'- -GUCu---GUGGCUgCGGa-------GCCG----UGGCUCg -5'
23264 3' -59 NC_005259.1 + 52131 0.66 0.577563
Target:  5'- --cGCACCGcCGUC-CGGCACCucGCc -3'
miRNA:   3'- gucUGUGGCuGCGGaGCCGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 40072 0.66 0.577563
Target:  5'- -uGACccauggGCCGACGC----GCACCGAGCg -3'
miRNA:   3'- guCUG------UGGCUGCGgagcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 38442 0.66 0.577563
Target:  5'- -cGAgACCGAaaaUGCCgugcgagGGCACCGAGg -3'
miRNA:   3'- guCUgUGGCU---GCGGag-----CCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 6518 0.66 0.577563
Target:  5'- -cGACGCCGuGCgcgcgacaaccgGCCUCGGgG-CGAGCg -3'
miRNA:   3'- guCUGUGGC-UG------------CGGAGCCgUgGCUCG- -5'
23264 3' -59 NC_005259.1 + 37353 0.66 0.581723
Target:  5'- gGGuuGCCGcugugcgaguagcucACGcCCUCGGCACCGcccGCc -3'
miRNA:   3'- gUCugUGGC---------------UGC-GGAGCCGUGGCu--CG- -5'
23264 3' -59 NC_005259.1 + 34004 0.66 0.587974
Target:  5'- gAGcuGCaACCGGCuguauccgGCCUCGGCGgCGuGCg -3'
miRNA:   3'- gUC--UG-UGGCUG--------CGGAGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 24226 0.66 0.587974
Target:  5'- -cGugACCGGCgggGCCgaGGCACgCGAGUu -3'
miRNA:   3'- guCugUGGCUG---CGGagCCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 64768 0.66 0.587974
Target:  5'- -cGACGgUG-CGCCUCGGCGgcCCGcuGCg -3'
miRNA:   3'- guCUGUgGCuGCGGAGCCGU--GGCu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.