Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 3860 | 0.7 | 0.385462 |
Target: 5'- -cGACGCCGgucgaGCGCCUCGaGCccaccCCGcAGCg -3' miRNA: 3'- guCUGUGGC-----UGCGGAGC-CGu----GGC-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 56270 | 0.7 | 0.385462 |
Target: 5'- --aGCGCCGcCGCCcggcccguaUCGGCACC-AGCa -3' miRNA: 3'- gucUGUGGCuGCGG---------AGCCGUGGcUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 27383 | 0.7 | 0.376984 |
Target: 5'- aCGGugACCGGCGgCggugUCGGCAgCG-GCg -3' miRNA: 3'- -GUCugUGGCUGCgG----AGCCGUgGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 43571 | 0.7 | 0.376984 |
Target: 5'- -cGACACCGAUGaCCUUGaGCAgcacucggaCGAGCa -3' miRNA: 3'- guCUGUGGCUGC-GGAGC-CGUg--------GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26338 | 0.7 | 0.376984 |
Target: 5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3' miRNA: 3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 14515 | 0.7 | 0.376143 |
Target: 5'- --cACACCGgcgagcacgcgguGCGUUUCGGUGCCGAGUu -3' miRNA: 3'- gucUGUGGC-------------UGCGGAGCCGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6925 | 0.7 | 0.368632 |
Target: 5'- gAGAacCGCCGcCGCCUUGagGCCGAGCu -3' miRNA: 3'- gUCU--GUGGCuGCGGAGCcgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 18433 | 0.7 | 0.368632 |
Target: 5'- --cGCGCaCGACGCCUCGuGCaacACCGcGCa -3' miRNA: 3'- gucUGUG-GCUGCGGAGC-CG---UGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 45520 | 0.7 | 0.359593 |
Target: 5'- --cGCGCCGGuguuggcCGCCgUGGCugCGAGCg -3' miRNA: 3'- gucUGUGGCU-------GCGGaGCCGugGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 11005 | 0.7 | 0.352313 |
Target: 5'- -cGGCACCG-CGCCggacGCGCCGAGg -3' miRNA: 3'- guCUGUGGCuGCGGagc-CGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 25957 | 0.7 | 0.351511 |
Target: 5'- cCGGccCGCCGACGCCUgCGaugagaccgggcaGCGCCGAGg -3' miRNA: 3'- -GUCu-GUGGCUGCGGA-GC-------------CGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26113 | 0.71 | 0.334188 |
Target: 5'- gCAGAcCGCCGcCGCCggucgcCGGUccgacgccgccgagGCCGAGCa -3' miRNA: 3'- -GUCU-GUGGCuGCGGa-----GCCG--------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 59102 | 0.71 | 0.321235 |
Target: 5'- -uGACGuuGAUGUCagcacgcgCGGCAUCGAGCa -3' miRNA: 3'- guCUGUggCUGCGGa-------GCCGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 47301 | 0.71 | 0.321235 |
Target: 5'- cCGGACAgCGACcCCUUGGCcugACCG-GCg -3' miRNA: 3'- -GUCUGUgGCUGcGGAGCCG---UGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 23305 | 0.72 | 0.299303 |
Target: 5'- uCGGGguCCGGCGCggUCGGUgucGCCGAGCc -3' miRNA: 3'- -GUCUguGGCUGCGg-AGCCG---UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 59385 | 0.72 | 0.299303 |
Target: 5'- --cGCACCG-UGCCUCcGCGCgCGAGCg -3' miRNA: 3'- gucUGUGGCuGCGGAGcCGUG-GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 30763 | 0.72 | 0.278548 |
Target: 5'- --cAUGCCGACGCCggUGGCACCGcuGCc -3' miRNA: 3'- gucUGUGGCUGCGGa-GCCGUGGCu-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 17760 | 0.73 | 0.258955 |
Target: 5'- gAGGcCGCCGcGCGCCgggccgaGcGCACCGAGCg -3' miRNA: 3'- gUCU-GUGGC-UGCGGag-----C-CGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 29697 | 0.73 | 0.258955 |
Target: 5'- -cGAgACCGAUGCCgaGGCACCGAucacGCu -3' miRNA: 3'- guCUgUGGCUGCGGagCCGUGGCU----CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 30362 | 0.73 | 0.252679 |
Target: 5'- uGGACGCCGAucugcccgcUGCC-CGGCgagaaACCGGGCc -3' miRNA: 3'- gUCUGUGGCU---------GCGGaGCCG-----UGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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