miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 25957 0.7 0.351511
Target:  5'- cCGGccCGCCGACGCCUgCGaugagaccgggcaGCGCCGAGg -3'
miRNA:   3'- -GUCu-GUGGCUGCGGA-GC-------------CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 26113 0.71 0.334188
Target:  5'- gCAGAcCGCCGcCGCCggucgcCGGUccgacgccgccgagGCCGAGCa -3'
miRNA:   3'- -GUCU-GUGGCuGCGGa-----GCCG--------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 26338 0.7 0.376984
Target:  5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3'
miRNA:   3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 26797 0.67 0.516197
Target:  5'- cCAG-CGCCGcCGCCcgguuggcCGGUACCG-GCg -3'
miRNA:   3'- -GUCuGUGGCuGCGGa-------GCCGUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 27160 0.7 0.385462
Target:  5'- gGGGCcaaCGAUGCCgUCGGCGauGAGCa -3'
miRNA:   3'- gUCUGug-GCUGCGG-AGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 27186 0.68 0.467144
Target:  5'- nCAGGCugCGACGCuggaaCUCccGCACCgcGAGCu -3'
miRNA:   3'- -GUCUGugGCUGCG-----GAGc-CGUGG--CUCG- -5'
23264 3' -59 NC_005259.1 + 27383 0.7 0.376984
Target:  5'- aCGGugACCGGCGgCggugUCGGCAgCG-GCg -3'
miRNA:   3'- -GUCugUGGCUGCgG----AGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 28955 0.69 0.438891
Target:  5'- --uGCGCCGcauCGCCgaggUCGGUGCCGAGg -3'
miRNA:   3'- gucUGUGGCu--GCGG----AGCCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 29398 0.68 0.486491
Target:  5'- --uACACCGAgGgCCUCGGCGagcUCGuGCg -3'
miRNA:   3'- gucUGUGGCUgC-GGAGCCGU---GGCuCG- -5'
23264 3' -59 NC_005259.1 + 29697 0.73 0.258955
Target:  5'- -cGAgACCGAUGCCgaGGCACCGAucacGCu -3'
miRNA:   3'- guCUgUGGCUGCGGagCCGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 29784 0.69 0.420607
Target:  5'- gAGGCAcccCCGGUGCCUCGGUACCucAGUc -3'
miRNA:   3'- gUCUGU---GGCUGCGGAGCCGUGGc-UCG- -5'
23264 3' -59 NC_005259.1 + 30133 0.66 0.598418
Target:  5'- -cGGCugCGAUaCCUCgGGCagcucgACCGGGCc -3'
miRNA:   3'- guCUGugGCUGcGGAG-CCG------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 30362 0.73 0.252679
Target:  5'- uGGACGCCGAucugcccgcUGCC-CGGCgagaaACCGGGCc -3'
miRNA:   3'- gUCUGUGGCU---------GCGGaGCCG-----UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 30763 0.72 0.278548
Target:  5'- --cAUGCCGACGCCggUGGCACCGcuGCc -3'
miRNA:   3'- gucUGUGGCUGCGGa-GCCGUGGCu-CG- -5'
23264 3' -59 NC_005259.1 + 32216 1.1 0.00053
Target:  5'- uCAGACACCGACGCCUCGGCACCGAGCu -3'
miRNA:   3'- -GUCUGUGGCUGCGGAGCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 32275 0.69 0.419705
Target:  5'- uGGGCACgccaugauguuggUGAUGCCUUGGC-CCaGAGCc -3'
miRNA:   3'- gUCUGUG-------------GCUGCGGAGCCGuGG-CUCG- -5'
23264 3' -59 NC_005259.1 + 32608 0.78 0.119516
Target:  5'- aGGACGCCGACacCCUCGaCAUCGAGCu -3'
miRNA:   3'- gUCUGUGGCUGc-GGAGCcGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 34004 0.66 0.587974
Target:  5'- gAGcuGCaACCGGCuguauccgGCCUCGGCGgCGuGCg -3'
miRNA:   3'- gUC--UG-UGGCUG--------CGGAGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 34746 0.66 0.567194
Target:  5'- uGGugAUCGuGCGCCaaUUGGCAUCGucGGCg -3'
miRNA:   3'- gUCugUGGC-UGCGG--AGCCGUGGC--UCG- -5'
23264 3' -59 NC_005259.1 + 35197 0.66 0.567194
Target:  5'- gCAG-CACCGugcCGCCUgaGGCGgCGAGg -3'
miRNA:   3'- -GUCuGUGGCu--GCGGAg-CCGUgGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.