Results 61 - 80 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 35794 | 0.66 | 0.618327 |
Target: 5'- -cGACGCCG-CGCCUCaacaggacGGUGCCGuacgaccccgcauAGCc -3' miRNA: 3'- guCUGUGGCuGCGGAG--------CCGUGGC-------------UCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 35994 | 0.66 | 0.598418 |
Target: 5'- -cGACGgCGAgGCCggaCuGCACCGAGg -3' miRNA: 3'- guCUGUgGCUgCGGa--GcCGUGGCUCg -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 36222 | 0.67 | 0.556873 |
Target: 5'- -cGAUGCCGAgCaCCUUGGCcaGCgCGAGCg -3' miRNA: 3'- guCUGUGGCU-GcGGAGCCG--UG-GCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 36851 | 0.68 | 0.448201 |
Target: 5'- -uGACGCCGcccgcuGCGCCguugcUGGCACCGcccGCg -3' miRNA: 3'- guCUGUGGC------UGCGGa----GCCGUGGCu--CG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 37353 | 0.66 | 0.581723 |
Target: 5'- gGGuuGCCGcugugcgaguagcucACGcCCUCGGCACCGcccGCc -3' miRNA: 3'- gUCugUGGC---------------UGC-GGAGCCGUGGCu--CG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 38442 | 0.66 | 0.577563 |
Target: 5'- -cGAgACCGAaaaUGCCgugcgagGGCACCGAGg -3' miRNA: 3'- guCUgUGGCU---GCGGag-----CCGUGGCUCg -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 40072 | 0.66 | 0.577563 |
Target: 5'- -uGACccauggGCCGACGC----GCACCGAGCg -3' miRNA: 3'- guCUG------UGGCUGCGgagcCGUGGCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 40339 | 0.77 | 0.136542 |
Target: 5'- cCGGACACCucGCGCCUCGaugaugaaccGCGCCGAGg -3' miRNA: 3'- -GUCUGUGGc-UGCGGAGC----------CGUGGCUCg -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 41479 | 0.69 | 0.402792 |
Target: 5'- -uGACGCCGucgagcACGaCCUCGGCGguggCGGGCa -3' miRNA: 3'- guCUGUGGC------UGC-GGAGCCGUg---GCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 43015 | 0.66 | 0.608888 |
Target: 5'- gAGAacaaACCGGCgauGCCgccgagcaGGcCGCCGAGCa -3' miRNA: 3'- gUCUg---UGGCUG---CGGag------CC-GUGGCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 43571 | 0.7 | 0.376984 |
Target: 5'- -cGACACCGAUGaCCUUGaGCAgcacucggaCGAGCa -3' miRNA: 3'- guCUGUGGCUGC-GGAGC-CGUg--------GCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 43931 | 0.68 | 0.476769 |
Target: 5'- -cGACACCG-CGCUacugacagcgUCGGCGauGGGCg -3' miRNA: 3'- guCUGUGGCuGCGG----------AGCCGUggCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 44275 | 0.76 | 0.155772 |
Target: 5'- -cGAgGCCGaACGCCUUGGCcaGCgCGAGCg -3' miRNA: 3'- guCUgUGGC-UGCGGAGCCG--UG-GCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 44750 | 0.68 | 0.476769 |
Target: 5'- --cGCGCCGAgGCuCUUGaGCACCGAucccGCa -3' miRNA: 3'- gucUGUGGCUgCG-GAGC-CGUGGCU----CG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 44999 | 0.67 | 0.556873 |
Target: 5'- gAGGCACCGcCGaCCgcCGGgGCCGcGCc -3' miRNA: 3'- gUCUGUGGCuGC-GGa-GCCgUGGCuCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 45520 | 0.7 | 0.359593 |
Target: 5'- --cGCGCCGGuguuggcCGCCgUGGCugCGAGCg -3' miRNA: 3'- gucUGUGGCU-------GCGGaGCCGugGCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 45600 | 0.69 | 0.406316 |
Target: 5'- cCAG-CACCGACaG-CUCGGUcucgaugcccgccggGCCGGGCa -3' miRNA: 3'- -GUCuGUGGCUG-CgGAGCCG---------------UGGCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 45741 | 0.67 | 0.550706 |
Target: 5'- -cGAgGCCGcgcacCGCCUCGGggaugagcacgcccuCGCCGGGUg -3' miRNA: 3'- guCUgUGGCu----GCGGAGCC---------------GUGGCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 45848 | 0.69 | 0.402792 |
Target: 5'- ---cCACCGGgGCCggUGGgACCGGGCa -3' miRNA: 3'- gucuGUGGCUgCGGa-GCCgUGGCUCG- -5' |
|||||||
23264 | 3' | -59 | NC_005259.1 | + | 46297 | 0.67 | 0.516197 |
Target: 5'- gGGGcCGCCGugGCUgcguuguucgCGGCcCCGAGg -3' miRNA: 3'- gUCU-GUGGCugCGGa---------GCCGuGGCUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home