miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 46763 0.67 0.506209
Target:  5'- -cGACACCuGCGCCgacagcCGcGCccGCCGGGCc -3'
miRNA:   3'- guCUGUGGcUGCGGa-----GC-CG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 47301 0.71 0.321235
Target:  5'- cCGGACAgCGACcCCUUGGCcugACCG-GCg -3'
miRNA:   3'- -GUCUGUgGCUGcGGAGCCG---UGGCuCG- -5'
23264 3' -59 NC_005259.1 + 50021 0.66 0.567194
Target:  5'- aCGGGCgcugcguaauccGCUGugGCCUCGaCACCGccccGCa -3'
miRNA:   3'- -GUCUG------------UGGCugCGGAGCcGUGGCu---CG- -5'
23264 3' -59 NC_005259.1 + 50409 0.67 0.536401
Target:  5'- gAGcGCGCCGGUGCCUugacCGGC-UCGGGCa -3'
miRNA:   3'- gUC-UGUGGCUGCGGA----GCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 50668 0.76 0.147802
Target:  5'- aGGGCACCaGCGCgUCGGUGCCGAcgagGCg -3'
miRNA:   3'- gUCUGUGGcUGCGgAGCCGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 51337 0.67 0.506209
Target:  5'- aGGAUGCCGGugagcucggauaUGCCcggUGGCACCG-GCa -3'
miRNA:   3'- gUCUGUGGCU------------GCGGa--GCCGUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 51506 0.66 0.60784
Target:  5'- -cGACGCCGccgaucucgacgcGCGugaCCUCGuGCACgGGGCc -3'
miRNA:   3'- guCUGUGGC-------------UGC---GGAGC-CGUGgCUCG- -5'
23264 3' -59 NC_005259.1 + 51740 0.68 0.448201
Target:  5'- uGGcCACCGccACGCuCUCGGCAgCGuuGCg -3'
miRNA:   3'- gUCuGUGGC--UGCG-GAGCCGUgGCu-CG- -5'
23264 3' -59 NC_005259.1 + 51982 0.69 0.429692
Target:  5'- cCAGAaucauCACCGACGCCgaucucgacCGGaUGCaCGAGCg -3'
miRNA:   3'- -GUCU-----GUGGCUGCGGa--------GCC-GUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 52131 0.66 0.577563
Target:  5'- --cGCACCGcCGUC-CGGCACCucGCc -3'
miRNA:   3'- gucUGUGGCuGCGGaGCCGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 54141 0.67 0.506209
Target:  5'- cCAGACGguuUCGAgGCC-CGGCGauGGGCa -3'
miRNA:   3'- -GUCUGU---GGCUgCGGaGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 54198 0.66 0.619376
Target:  5'- uCAGGCGgCGGC-CCUUgacgGGCuggauACCGGGCa -3'
miRNA:   3'- -GUCUGUgGCUGcGGAG----CCG-----UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 55603 0.66 0.619376
Target:  5'- -cGAUACC-ACGUCUCGcGCGCCuuGGCc -3'
miRNA:   3'- guCUGUGGcUGCGGAGC-CGUGGc-UCG- -5'
23264 3' -59 NC_005259.1 + 56270 0.7 0.385462
Target:  5'- --aGCGCCGcCGCCcggcccguaUCGGCACC-AGCa -3'
miRNA:   3'- gucUGUGGCuGCGG---------AGCCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 57112 0.67 0.505215
Target:  5'- --uGCGCUGAucguccuCGCCcaUCGGCgggACCGAGCa -3'
miRNA:   3'- gucUGUGGCU-------GCGG--AGCCG---UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 58746 0.67 0.546606
Target:  5'- -cGGCACCGGCGaagUUCGGCGaacgacgcugCGGGCg -3'
miRNA:   3'- guCUGUGGCUGCg--GAGCCGUg---------GCUCG- -5'
23264 3' -59 NC_005259.1 + 58859 0.67 0.546606
Target:  5'- uCGGGCucGCCGucgucgucguCGCCUCGGCAUCGc-- -3'
miRNA:   3'- -GUCUG--UGGCu---------GCGGAGCCGUGGCucg -5'
23264 3' -59 NC_005259.1 + 59102 0.71 0.321235
Target:  5'- -uGACGuuGAUGUCagcacgcgCGGCAUCGAGCa -3'
miRNA:   3'- guCUGUggCUGCGGa-------GCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 59385 0.72 0.299303
Target:  5'- --cGCACCG-UGCCUCcGCGCgCGAGCg -3'
miRNA:   3'- gucUGUGGCuGCGGAGcCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 60201 0.7 0.394065
Target:  5'- cCGGGCcacgaucucGCCGAUcuCgUCGGCGCUGAGCu -3'
miRNA:   3'- -GUCUG---------UGGCUGc-GgAGCCGUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.