miRNA display CGI


Results 101 - 113 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 60671 0.66 0.598418
Target:  5'- -uGACGC--ACGCgUUCuGCACCGAGCg -3'
miRNA:   3'- guCUGUGgcUGCG-GAGcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 61070 0.68 0.467144
Target:  5'- cCGGGCAUCGgcauagGCGUCgUCGGCcUCGGGCu -3'
miRNA:   3'- -GUCUGUGGC------UGCGG-AGCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 61161 0.73 0.228248
Target:  5'- aGGACACCGAcgguguaCGCCUCGGUauggcccucGCCGGucuGCu -3'
miRNA:   3'- gUCUGUGGCU-------GCGGAGCCG---------UGGCU---CG- -5'
23264 3' -59 NC_005259.1 + 62861 0.67 0.536401
Target:  5'- gCAGcCGCuCGGCGCgagguaggccgCUCGGuCAUUGAGCg -3'
miRNA:   3'- -GUCuGUG-GCUGCG-----------GAGCC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 63247 0.67 0.506209
Target:  5'- uCAGAC-CCGACGCgUCG-UACCaGAGg -3'
miRNA:   3'- -GUCUGuGGCUGCGgAGCcGUGG-CUCg -5'
23264 3' -59 NC_005259.1 + 63663 0.77 0.129479
Target:  5'- gGGACGCCgGACaCCUCgGGCACCGGcGCg -3'
miRNA:   3'- gUCUGUGG-CUGcGGAG-CCGUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 64768 0.66 0.587974
Target:  5'- -cGACGgUG-CGCCUCGGCGgcCCGcuGCg -3'
miRNA:   3'- guCUGUgGCuGCGGAGCCGU--GGCu-CG- -5'
23264 3' -59 NC_005259.1 + 66244 0.74 0.196625
Target:  5'- gCAGcCAUCGACGCagcgCGGCccgcGCCGGGCg -3'
miRNA:   3'- -GUCuGUGGCUGCGga--GCCG----UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 66856 0.68 0.448201
Target:  5'- aCGGGcCACCGAUcgGCCUUGuucGCACCGcGCc -3'
miRNA:   3'- -GUCU-GUGGCUG--CGGAGC---CGUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 66949 0.69 0.437966
Target:  5'- gGGACACCGGCGagcuguuUCUUGcGCGCCucGCg -3'
miRNA:   3'- gUCUGUGGCUGC-------GGAGC-CGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 68170 0.67 0.526262
Target:  5'- uGGACGCgCG-CGCUUUGGCAgcUCGcAGCg -3'
miRNA:   3'- gUCUGUG-GCuGCGGAGCCGU--GGC-UCG- -5'
23264 3' -59 NC_005259.1 + 68276 0.73 0.228248
Target:  5'- gUAGGCACCGuccuCGCCccauacaUCGGgAUCGGGCg -3'
miRNA:   3'- -GUCUGUGGCu---GCGG-------AGCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 68416 0.67 0.536401
Target:  5'- gUAGACcUUGACGCCUCGcGCggGCCGGu- -3'
miRNA:   3'- -GUCUGuGGCUGCGGAGC-CG--UGGCUcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.