miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 44275 0.76 0.155772
Target:  5'- -cGAgGCCGaACGCCUUGGCcaGCgCGAGCg -3'
miRNA:   3'- guCUgUGGC-UGCGGAGCCG--UG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 43931 0.68 0.476769
Target:  5'- -cGACACCG-CGCUacugacagcgUCGGCGauGGGCg -3'
miRNA:   3'- guCUGUGGCuGCGG----------AGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 43571 0.7 0.376984
Target:  5'- -cGACACCGAUGaCCUUGaGCAgcacucggaCGAGCa -3'
miRNA:   3'- guCUGUGGCUGC-GGAGC-CGUg--------GCUCG- -5'
23264 3' -59 NC_005259.1 + 43015 0.66 0.608888
Target:  5'- gAGAacaaACCGGCgauGCCgccgagcaGGcCGCCGAGCa -3'
miRNA:   3'- gUCUg---UGGCUG---CGGag------CC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 41479 0.69 0.402792
Target:  5'- -uGACGCCGucgagcACGaCCUCGGCGguggCGGGCa -3'
miRNA:   3'- guCUGUGGC------UGC-GGAGCCGUg---GCUCG- -5'
23264 3' -59 NC_005259.1 + 40339 0.77 0.136542
Target:  5'- cCGGACACCucGCGCCUCGaugaugaaccGCGCCGAGg -3'
miRNA:   3'- -GUCUGUGGc-UGCGGAGC----------CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 40072 0.66 0.577563
Target:  5'- -uGACccauggGCCGACGC----GCACCGAGCg -3'
miRNA:   3'- guCUG------UGGCUGCGgagcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 38442 0.66 0.577563
Target:  5'- -cGAgACCGAaaaUGCCgugcgagGGCACCGAGg -3'
miRNA:   3'- guCUgUGGCU---GCGGag-----CCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 37353 0.66 0.581723
Target:  5'- gGGuuGCCGcugugcgaguagcucACGcCCUCGGCACCGcccGCc -3'
miRNA:   3'- gUCugUGGC---------------UGC-GGAGCCGUGGCu--CG- -5'
23264 3' -59 NC_005259.1 + 36851 0.68 0.448201
Target:  5'- -uGACGCCGcccgcuGCGCCguugcUGGCACCGcccGCg -3'
miRNA:   3'- guCUGUGGC------UGCGGa----GCCGUGGCu--CG- -5'
23264 3' -59 NC_005259.1 + 36222 0.67 0.556873
Target:  5'- -cGAUGCCGAgCaCCUUGGCcaGCgCGAGCg -3'
miRNA:   3'- guCUGUGGCU-GcGGAGCCG--UG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 35994 0.66 0.598418
Target:  5'- -cGACGgCGAgGCCggaCuGCACCGAGg -3'
miRNA:   3'- guCUGUgGCUgCGGa--GcCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 35794 0.66 0.618327
Target:  5'- -cGACGCCG-CGCCUCaacaggacGGUGCCGuacgaccccgcauAGCc -3'
miRNA:   3'- guCUGUGGCuGCGGAG--------CCGUGGC-------------UCG- -5'
23264 3' -59 NC_005259.1 + 35197 0.66 0.567194
Target:  5'- gCAG-CACCGugcCGCCUgaGGCGgCGAGg -3'
miRNA:   3'- -GUCuGUGGCu--GCGGAg-CCGUgGCUCg -5'
23264 3' -59 NC_005259.1 + 34746 0.66 0.567194
Target:  5'- uGGugAUCGuGCGCCaaUUGGCAUCGucGGCg -3'
miRNA:   3'- gUCugUGGC-UGCGG--AGCCGUGGC--UCG- -5'
23264 3' -59 NC_005259.1 + 34004 0.66 0.587974
Target:  5'- gAGcuGCaACCGGCuguauccgGCCUCGGCGgCGuGCg -3'
miRNA:   3'- gUC--UG-UGGCUG--------CGGAGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 32608 0.78 0.119516
Target:  5'- aGGACGCCGACacCCUCGaCAUCGAGCu -3'
miRNA:   3'- gUCUGUGGCUGc-GGAGCcGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 32275 0.69 0.419705
Target:  5'- uGGGCACgccaugauguuggUGAUGCCUUGGC-CCaGAGCc -3'
miRNA:   3'- gUCUGUG-------------GCUGCGGAGCCGuGG-CUCG- -5'
23264 3' -59 NC_005259.1 + 32216 1.1 0.00053
Target:  5'- uCAGACACCGACGCCUCGGCACCGAGCu -3'
miRNA:   3'- -GUCUGUGGCUGCGGAGCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 30763 0.72 0.278548
Target:  5'- --cAUGCCGACGCCggUGGCACCGcuGCc -3'
miRNA:   3'- gucUGUGGCUGCGGa-GCCGUGGCu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.