Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 30362 | 0.73 | 0.252679 |
Target: 5'- uGGACGCCGAucugcccgcUGCC-CGGCgagaaACCGGGCc -3' miRNA: 3'- gUCUGUGGCU---------GCGGaGCCG-----UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 30133 | 0.66 | 0.598418 |
Target: 5'- -cGGCugCGAUaCCUCgGGCagcucgACCGGGCc -3' miRNA: 3'- guCUGugGCUGcGGAG-CCG------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 29784 | 0.69 | 0.420607 |
Target: 5'- gAGGCAcccCCGGUGCCUCGGUACCucAGUc -3' miRNA: 3'- gUCUGU---GGCUGCGGAGCCGUGGc-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 29697 | 0.73 | 0.258955 |
Target: 5'- -cGAgACCGAUGCCgaGGCACCGAucacGCu -3' miRNA: 3'- guCUgUGGCUGCGGagCCGUGGCU----CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 29398 | 0.68 | 0.486491 |
Target: 5'- --uACACCGAgGgCCUCGGCGagcUCGuGCg -3' miRNA: 3'- gucUGUGGCUgC-GGAGCCGU---GGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 28955 | 0.69 | 0.438891 |
Target: 5'- --uGCGCCGcauCGCCgaggUCGGUGCCGAGg -3' miRNA: 3'- gucUGUGGCu--GCGG----AGCCGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 27383 | 0.7 | 0.376984 |
Target: 5'- aCGGugACCGGCGgCggugUCGGCAgCG-GCg -3' miRNA: 3'- -GUCugUGGCUGCgG----AGCCGUgGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 27186 | 0.68 | 0.467144 |
Target: 5'- nCAGGCugCGACGCuggaaCUCccGCACCgcGAGCu -3' miRNA: 3'- -GUCUGugGCUGCG-----GAGc-CGUGG--CUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 27160 | 0.7 | 0.385462 |
Target: 5'- gGGGCcaaCGAUGCCgUCGGCGauGAGCa -3' miRNA: 3'- gUCUGug-GCUGCGG-AGCCGUggCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26797 | 0.67 | 0.516197 |
Target: 5'- cCAG-CGCCGcCGCCcgguuggcCGGUACCG-GCg -3' miRNA: 3'- -GUCuGUGGCuGCGGa-------GCCGUGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26338 | 0.7 | 0.376984 |
Target: 5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3' miRNA: 3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26113 | 0.71 | 0.334188 |
Target: 5'- gCAGAcCGCCGcCGCCggucgcCGGUccgacgccgccgagGCCGAGCa -3' miRNA: 3'- -GUCU-GUGGCuGCGGa-----GCCG--------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 25957 | 0.7 | 0.351511 |
Target: 5'- cCGGccCGCCGACGCCUgCGaugagaccgggcaGCGCCGAGg -3' miRNA: 3'- -GUCu-GUGGCUGCGGA-GC-------------CGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 24226 | 0.66 | 0.587974 |
Target: 5'- -cGugACCGGCgggGCCgaGGCACgCGAGUu -3' miRNA: 3'- guCugUGGCUG---CGGagCCGUG-GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 23454 | 0.66 | 0.60784 |
Target: 5'- gCAGAuugcuuuCGCaCGGgGCCUCGGCauugucgguGCCGAcGCc -3' miRNA: 3'- -GUCU-------GUG-GCUgCGGAGCCG---------UGGCU-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 23305 | 0.72 | 0.299303 |
Target: 5'- uCGGGguCCGGCGCggUCGGUgucGCCGAGCc -3' miRNA: 3'- -GUCUguGGCUGCGg-AGCCG---UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 23005 | 0.67 | 0.546606 |
Target: 5'- gAGGuCACCGAggaCGgCUCGGuCAUCGAGa -3' miRNA: 3'- gUCU-GUGGCU---GCgGAGCC-GUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 22698 | 0.67 | 0.556873 |
Target: 5'- ---cCGCCGuCGCCgucacCGGCucgaugagcuacGCCGAGCg -3' miRNA: 3'- gucuGUGGCuGCGGa----GCCG------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 21229 | 0.7 | 0.394065 |
Target: 5'- ----aGCCGAguaCGCCUCGGCAgCGcGCg -3' miRNA: 3'- gucugUGGCU---GCGGAGCCGUgGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 21166 | 0.66 | 0.598418 |
Target: 5'- -cGuCACCGACGgCagucgggucaUCGGCG-CGAGCa -3' miRNA: 3'- guCuGUGGCUGCgG----------AGCCGUgGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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