Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 20490 | 0.67 | 0.536401 |
Target: 5'- -cGACACCGcccgGCaGCUcaUCGGCGacggugucCCGAGCa -3' miRNA: 3'- guCUGUGGC----UG-CGG--AGCCGU--------GGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 20409 | 0.69 | 0.420607 |
Target: 5'- aGGGCAUCGAgGUCUaccCGGuCACCGAcGCc -3' miRNA: 3'- gUCUGUGGCUgCGGA---GCC-GUGGCU-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 20166 | 0.66 | 0.567194 |
Target: 5'- uGGcCACCGcgcccgcCGCCUCGGCugaCGAGa -3' miRNA: 3'- gUCuGUGGCu------GCGGAGCCGug-GCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 19215 | 0.66 | 0.619376 |
Target: 5'- gCGGGCGgCGACGUg--GGaCACCGAGUc -3' miRNA: 3'- -GUCUGUgGCUGCGgagCC-GUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 18433 | 0.7 | 0.368632 |
Target: 5'- --cGCGCaCGACGCCUCGuGCaacACCGcGCa -3' miRNA: 3'- gucUGUG-GCUGCGGAGC-CG---UGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 18349 | 0.69 | 0.420607 |
Target: 5'- -cGACGCCGACGgCgacaugUGGCACaugcccgaGGGCg -3' miRNA: 3'- guCUGUGGCUGCgGa-----GCCGUGg-------CUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 17760 | 0.73 | 0.258955 |
Target: 5'- gAGGcCGCCGcGCGCCgggccgaGcGCACCGAGCg -3' miRNA: 3'- gUCU-GUGGC-UGCGGag-----C-CGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 16667 | 0.68 | 0.464276 |
Target: 5'- gGGugACCGccucgauguggucgGCGauCCUgGGCACCGAGg -3' miRNA: 3'- gUCugUGGC--------------UGC--GGAgCCGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 16447 | 0.68 | 0.45762 |
Target: 5'- cCGGGCACCGuCGgCaUCGGUACCccGCc -3' miRNA: 3'- -GUCUGUGGCuGCgG-AGCCGUGGcuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 15208 | 0.73 | 0.228819 |
Target: 5'- -uGAUGCUGugGCgCUCGGCGCUcGGCa -3' miRNA: 3'- guCUGUGGCugCG-GAGCCGUGGcUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 15062 | 0.66 | 0.598418 |
Target: 5'- -cGAUACCGugGCCacccUGGC-CCuuGAGCc -3' miRNA: 3'- guCUGUGGCugCGGa---GCCGuGG--CUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 14515 | 0.7 | 0.376143 |
Target: 5'- --cACACCGgcgagcacgcgguGCGUUUCGGUGCCGAGUu -3' miRNA: 3'- gucUGUGGC-------------UGCGGAGCCGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 14326 | 0.67 | 0.556873 |
Target: 5'- -cGACGCCGcCGCCcgcgugCGGgcCGCCGAcGCc -3' miRNA: 3'- guCUGUGGCuGCGGa-----GCC--GUGGCU-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 13010 | 0.66 | 0.598418 |
Target: 5'- uCGGcuACGCCGcCGCC-CGGC-CCcAGCa -3' miRNA: 3'- -GUC--UGUGGCuGCGGaGCCGuGGcUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 12501 | 0.67 | 0.536401 |
Target: 5'- uCAGGCguaGCCGcuGgGCCgcUCGGCuacccguagaGCCGAGCg -3' miRNA: 3'- -GUCUG---UGGC--UgCGG--AGCCG----------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 12334 | 0.67 | 0.506209 |
Target: 5'- cCAGcucacGCACCGcCGCCUCGaaACCG-GCc -3' miRNA: 3'- -GUC-----UGUGGCuGCGGAGCcgUGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 12044 | 0.66 | 0.567194 |
Target: 5'- cCGGuacuCACCGAgGCCgagcucugCGGCagacACCGAGa -3' miRNA: 3'- -GUCu---GUGGCUgCGGa-------GCCG----UGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 11005 | 0.7 | 0.352313 |
Target: 5'- -cGGCACCG-CGCCggacGCGCCGAGg -3' miRNA: 3'- guCUGUGGCuGCGGagc-CGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 10081 | 0.74 | 0.206368 |
Target: 5'- aGGACGCCGACGaguagacCCcgaGGcCACCGAGCu -3' miRNA: 3'- gUCUGUGGCUGC-------GGag-CC-GUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8965 | 0.66 | 0.567194 |
Target: 5'- aCGGGCACCG-UGCCgggacguaGGUGCC-AGCg -3' miRNA: 3'- -GUCUGUGGCuGCGGag------CCGUGGcUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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