Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 8512 | 0.67 | 0.526262 |
Target: 5'- cCAGACGCagcgagcaCGACaGCCaaUCGGCGauGAGCu -3' miRNA: 3'- -GUCUGUG--------GCUG-CGG--AGCCGUggCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8481 | 0.67 | 0.556873 |
Target: 5'- --aGCACCG-CGCUgUCGGCACUGAu- -3' miRNA: 3'- gucUGUGGCuGCGG-AGCCGUGGCUcg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 8383 | 0.79 | 0.098982 |
Target: 5'- -cGGCAUCGGCgagaGCCUCGGCgaGCCGGGCc -3' miRNA: 3'- guCUGUGGCUG----CGGAGCCG--UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 7855 | 0.69 | 0.429692 |
Target: 5'- aCGGACcgcGCCGACcCCggUGGC-CCGAGUg -3' miRNA: 3'- -GUCUG---UGGCUGcGGa-GCCGuGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 7176 | 0.75 | 0.182059 |
Target: 5'- aGGGCACCGGCgagugcccgGCCUgCGgacGCACCGGGCu -3' miRNA: 3'- gUCUGUGGCUG---------CGGA-GC---CGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6925 | 0.7 | 0.368632 |
Target: 5'- gAGAacCGCCGcCGCCUUGagGCCGAGCu -3' miRNA: 3'- gUCU--GUGGCuGCGGAGCcgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6518 | 0.66 | 0.577563 |
Target: 5'- -cGACGCCGuGCgcgcgacaaccgGCCUCGGgG-CGAGCg -3' miRNA: 3'- guCUGUGGC-UG------------CGGAGCCgUgGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6422 | 0.68 | 0.476769 |
Target: 5'- -uGGC-CCGAccuCGCCgaugUCGGCACCGucGCg -3' miRNA: 3'- guCUGuGGCU---GCGG----AGCCGUGGCu-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 6301 | 0.67 | 0.536401 |
Target: 5'- gCGG-UACCGAUGUCgaCGGCaugaccuaccuuGCCGGGCa -3' miRNA: 3'- -GUCuGUGGCUGCGGa-GCCG------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 5836 | 0.67 | 0.553787 |
Target: 5'- gAGACcagaacgugcgcauGCuCGuCGCCUCGGUGCuccaCGAGCa -3' miRNA: 3'- gUCUG--------------UG-GCuGCGGAGCCGUG----GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 5193 | 0.68 | 0.45762 |
Target: 5'- -cGACGCCGcCGCCaagcucacCGcGCucGCCGAGCa -3' miRNA: 3'- guCUGUGGCuGCGGa-------GC-CG--UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 3860 | 0.7 | 0.385462 |
Target: 5'- -cGACGCCGgucgaGCGCCUCGaGCccaccCCGcAGCg -3' miRNA: 3'- guCUGUGGC-----UGCGGAGC-CGu----GGC-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 3536 | 0.68 | 0.45762 |
Target: 5'- -cGACACCGACcacaGCCagauccgCGaGCuuGCCGAGCu -3' miRNA: 3'- guCUGUGGCUG----CGGa------GC-CG--UGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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