miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 50668 0.76 0.147802
Target:  5'- aGGGCACCaGCGCgUCGGUGCCGAcgagGCg -3'
miRNA:   3'- gUCUGUGGcUGCGgAGCCGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 40339 0.77 0.136542
Target:  5'- cCGGACACCucGCGCCUCGaugaugaaccGCGCCGAGg -3'
miRNA:   3'- -GUCUGUGGc-UGCGGAGC----------CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 63663 0.77 0.129479
Target:  5'- gGGACGCCgGACaCCUCgGGCACCGGcGCg -3'
miRNA:   3'- gUCUGUGG-CUGcGGAG-CCGUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 32608 0.78 0.119516
Target:  5'- aGGACGCCGACacCCUCGaCAUCGAGCu -3'
miRNA:   3'- gUCUGUGGCUGc-GGAGCcGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 8383 0.79 0.098982
Target:  5'- -cGGCAUCGGCgagaGCCUCGGCgaGCCGGGCc -3'
miRNA:   3'- guCUGUGGCUG----CGGAGCCG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 17760 0.73 0.258955
Target:  5'- gAGGcCGCCGcGCGCCgggccgaGcGCACCGAGCg -3'
miRNA:   3'- gUCU-GUGGC-UGCGGag-----C-CGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 29697 0.73 0.258955
Target:  5'- -cGAgACCGAUGCCgaGGCACCGAucacGCu -3'
miRNA:   3'- guCUgUGGCUGCGGagCCGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 26338 0.7 0.376984
Target:  5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3'
miRNA:   3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 14515 0.7 0.376143
Target:  5'- --cACACCGgcgagcacgcgguGCGUUUCGGUGCCGAGUu -3'
miRNA:   3'- gucUGUGGC-------------UGCGGAGCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 18433 0.7 0.368632
Target:  5'- --cGCGCaCGACGCCUCGuGCaacACCGcGCa -3'
miRNA:   3'- gucUGUG-GCUGCGGAGC-CG---UGGCuCG- -5'
23264 3' -59 NC_005259.1 + 6925 0.7 0.368632
Target:  5'- gAGAacCGCCGcCGCCUUGagGCCGAGCu -3'
miRNA:   3'- gUCU--GUGGCuGCGGAGCcgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 45520 0.7 0.359593
Target:  5'- --cGCGCCGGuguuggcCGCCgUGGCugCGAGCg -3'
miRNA:   3'- gucUGUGGCU-------GCGGaGCCGugGCUCG- -5'
23264 3' -59 NC_005259.1 + 11005 0.7 0.352313
Target:  5'- -cGGCACCG-CGCCggacGCGCCGAGg -3'
miRNA:   3'- guCUGUGGCuGCGGagc-CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 25957 0.7 0.351511
Target:  5'- cCGGccCGCCGACGCCUgCGaugagaccgggcaGCGCCGAGg -3'
miRNA:   3'- -GUCu-GUGGCUGCGGA-GC-------------CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 26113 0.71 0.334188
Target:  5'- gCAGAcCGCCGcCGCCggucgcCGGUccgacgccgccgagGCCGAGCa -3'
miRNA:   3'- -GUCU-GUGGCuGCGGa-----GCCG--------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 59102 0.71 0.321235
Target:  5'- -uGACGuuGAUGUCagcacgcgCGGCAUCGAGCa -3'
miRNA:   3'- guCUGUggCUGCGGa-------GCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 47301 0.71 0.321235
Target:  5'- cCGGACAgCGACcCCUUGGCcugACCG-GCg -3'
miRNA:   3'- -GUCUGUgGCUGcGGAGCCG---UGGCuCG- -5'
23264 3' -59 NC_005259.1 + 59385 0.72 0.299303
Target:  5'- --cGCACCG-UGCCUCcGCGCgCGAGCg -3'
miRNA:   3'- gucUGUGGCuGCGGAGcCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 23305 0.72 0.299303
Target:  5'- uCGGGguCCGGCGCggUCGGUgucGCCGAGCc -3'
miRNA:   3'- -GUCUguGGCUGCGg-AGCCG---UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 30763 0.72 0.278548
Target:  5'- --cAUGCCGACGCCggUGGCACCGcuGCc -3'
miRNA:   3'- gucUGUGGCUGCGGa-GCCGUGGCu-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.