Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23264 | 3' | -59 | NC_005259.1 | + | 29784 | 0.69 | 0.420607 |
Target: 5'- gAGGCAcccCCGGUGCCUCGGUACCucAGUc -3' miRNA: 3'- gUCUGU---GGCUGCGGAGCCGUGGc-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 7855 | 0.69 | 0.429692 |
Target: 5'- aCGGACcgcGCCGACcCCggUGGC-CCGAGUg -3' miRNA: 3'- -GUCUG---UGGCUGcGGa-GCCGuGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 51982 | 0.69 | 0.429692 |
Target: 5'- cCAGAaucauCACCGACGCCgaucucgacCGGaUGCaCGAGCg -3' miRNA: 3'- -GUCU-----GUGGCUGCGGa--------GCC-GUG-GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 66949 | 0.69 | 0.437966 |
Target: 5'- gGGACACCGGCGagcuguuUCUUGcGCGCCucGCg -3' miRNA: 3'- gUCUGUGGCUGC-------GGAGC-CGUGGcuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 28955 | 0.69 | 0.438891 |
Target: 5'- --uGCGCCGcauCGCCgaggUCGGUGCCGAGg -3' miRNA: 3'- gucUGUGGCu--GCGG----AGCCGUGGCUCg -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 36851 | 0.68 | 0.448201 |
Target: 5'- -uGACGCCGcccgcuGCGCCguugcUGGCACCGcccGCg -3' miRNA: 3'- guCUGUGGC------UGCGGa----GCCGUGGCu--CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 51740 | 0.68 | 0.448201 |
Target: 5'- uGGcCACCGccACGCuCUCGGCAgCGuuGCg -3' miRNA: 3'- gUCuGUGGC--UGCG-GAGCCGUgGCu-CG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 45600 | 0.69 | 0.406316 |
Target: 5'- cCAG-CACCGACaG-CUCGGUcucgaugcccgccggGCCGGGCa -3' miRNA: 3'- -GUCuGUGGCUG-CgGAGCCG---------------UGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 41479 | 0.69 | 0.402792 |
Target: 5'- -uGACGCCGucgagcACGaCCUCGGCGguggCGGGCa -3' miRNA: 3'- guCUGUGGC------UGC-GGAGCCGUg---GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 45848 | 0.69 | 0.402792 |
Target: 5'- ---cCACCGGgGCCggUGGgACCGGGCa -3' miRNA: 3'- gucuGUGGCUgCGGa-GCCgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 18433 | 0.7 | 0.368632 |
Target: 5'- --cGCGCaCGACGCCUCGuGCaacACCGcGCa -3' miRNA: 3'- gucUGUG-GCUGCGGAGC-CG---UGGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 14515 | 0.7 | 0.376143 |
Target: 5'- --cACACCGgcgagcacgcgguGCGUUUCGGUGCCGAGUu -3' miRNA: 3'- gucUGUGGC-------------UGCGGAGCCGUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 26338 | 0.7 | 0.376984 |
Target: 5'- aCAGAUAgC-ACGcCCUCGG-GCCGAGCu -3' miRNA: 3'- -GUCUGUgGcUGC-GGAGCCgUGGCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 43571 | 0.7 | 0.376984 |
Target: 5'- -cGACACCGAUGaCCUUGaGCAgcacucggaCGAGCa -3' miRNA: 3'- guCUGUGGCUGC-GGAGC-CGUg--------GCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 27383 | 0.7 | 0.376984 |
Target: 5'- aCGGugACCGGCGgCggugUCGGCAgCG-GCg -3' miRNA: 3'- -GUCugUGGCUGCgG----AGCCGUgGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 27160 | 0.7 | 0.385462 |
Target: 5'- gGGGCcaaCGAUGCCgUCGGCGauGAGCa -3' miRNA: 3'- gUCUGug-GCUGCGG-AGCCGUggCUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 3860 | 0.7 | 0.385462 |
Target: 5'- -cGACGCCGgucgaGCGCCUCGaGCccaccCCGcAGCg -3' miRNA: 3'- guCUGUGGC-----UGCGGAGC-CGu----GGC-UCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 56270 | 0.7 | 0.385462 |
Target: 5'- --aGCGCCGcCGCCcggcccguaUCGGCACC-AGCa -3' miRNA: 3'- gucUGUGGCuGCGG---------AGCCGUGGcUCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 21229 | 0.7 | 0.394065 |
Target: 5'- ----aGCCGAguaCGCCUCGGCAgCGcGCg -3' miRNA: 3'- gucugUGGCU---GCGGAGCCGUgGCuCG- -5' |
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23264 | 3' | -59 | NC_005259.1 | + | 60201 | 0.7 | 0.394065 |
Target: 5'- cCGGGCcacgaucucGCCGAUcuCgUCGGCGCUGAGCu -3' miRNA: 3'- -GUCUG---------UGGCUGc-GgAGCCGUGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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