miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 50021 0.66 0.567194
Target:  5'- aCGGGCgcugcguaauccGCUGugGCCUCGaCACCGccccGCa -3'
miRNA:   3'- -GUCUG------------UGGCugCGGAGCcGUGGCu---CG- -5'
23264 3' -59 NC_005259.1 + 52131 0.66 0.577563
Target:  5'- --cGCACCGcCGUC-CGGCACCucGCc -3'
miRNA:   3'- gucUGUGGCuGCGGaGCCGUGGcuCG- -5'
23264 3' -59 NC_005259.1 + 34746 0.66 0.567194
Target:  5'- uGGugAUCGuGCGCCaaUUGGCAUCGucGGCg -3'
miRNA:   3'- gUCugUGGC-UGCGG--AGCCGUGGC--UCG- -5'
23264 3' -59 NC_005259.1 + 40072 0.66 0.577563
Target:  5'- -uGACccauggGCCGACGC----GCACCGAGCg -3'
miRNA:   3'- guCUG------UGGCUGCGgagcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 24226 0.66 0.587974
Target:  5'- -cGugACCGGCgggGCCgaGGCACgCGAGUu -3'
miRNA:   3'- guCugUGGCUG---CGGagCCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 60671 0.66 0.598418
Target:  5'- -uGACGC--ACGCgUUCuGCACCGAGCg -3'
miRNA:   3'- guCUGUGgcUGCG-GAGcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 64768 0.66 0.587974
Target:  5'- -cGACGgUG-CGCCUCGGCGgcCCGcuGCg -3'
miRNA:   3'- guCUGUgGCuGCGGAGCCGU--GGCu-CG- -5'
23264 3' -59 NC_005259.1 + 8481 0.67 0.556873
Target:  5'- --aGCACCG-CGCUgUCGGCACUGAu- -3'
miRNA:   3'- gucUGUGGCuGCGG-AGCCGUGGCUcg -5'
23264 3' -59 NC_005259.1 + 44999 0.67 0.556873
Target:  5'- gAGGCACCGcCGaCCgcCGGgGCCGcGCc -3'
miRNA:   3'- gUCUGUGGCuGC-GGa-GCCgUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 46297 0.67 0.516197
Target:  5'- gGGGcCGCCGugGCUgcguuguucgCGGCcCCGAGg -3'
miRNA:   3'- gUCU-GUGGCugCGGa---------GCCGuGGCUCg -5'
23264 3' -59 NC_005259.1 + 14326 0.67 0.556873
Target:  5'- -cGACGCCGcCGCCcgcgugCGGgcCGCCGAcGCc -3'
miRNA:   3'- guCUGUGGCuGCGGa-----GCC--GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 62861 0.67 0.536401
Target:  5'- gCAGcCGCuCGGCGCgagguaggccgCUCGGuCAUUGAGCg -3'
miRNA:   3'- -GUCuGUG-GCUGCG-----------GAGCC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 57112 0.67 0.505215
Target:  5'- --uGCGCUGAucguccuCGCCcaUCGGCgggACCGAGCa -3'
miRNA:   3'- gucUGUGGCU-------GCGG--AGCCG---UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 68170 0.67 0.526262
Target:  5'- uGGACGCgCG-CGCUUUGGCAgcUCGcAGCg -3'
miRNA:   3'- gUCUGUG-GCuGCGGAGCCGU--GGC-UCG- -5'
23264 3' -59 NC_005259.1 + 8512 0.67 0.526262
Target:  5'- cCAGACGCagcgagcaCGACaGCCaaUCGGCGauGAGCu -3'
miRNA:   3'- -GUCUGUG--------GCUG-CGG--AGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 12501 0.67 0.536401
Target:  5'- uCAGGCguaGCCGcuGgGCCgcUCGGCuacccguagaGCCGAGCg -3'
miRNA:   3'- -GUCUG---UGGC--UgCGG--AGCCG----------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 6301 0.67 0.536401
Target:  5'- gCGG-UACCGAUGUCgaCGGCaugaccuaccuuGCCGGGCa -3'
miRNA:   3'- -GUCuGUGGCUGCGGa-GCCG------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 20490 0.67 0.536401
Target:  5'- -cGACACCGcccgGCaGCUcaUCGGCGacggugucCCGAGCa -3'
miRNA:   3'- guCUGUGGC----UG-CGG--AGCCGU--------GGCUCG- -5'
23264 3' -59 NC_005259.1 + 50409 0.67 0.536401
Target:  5'- gAGcGCGCCGGUGCCUugacCGGC-UCGGGCa -3'
miRNA:   3'- gUC-UGUGGCUGCGGA----GCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 68416 0.67 0.536401
Target:  5'- gUAGACcUUGACGCCUCGcGCggGCCGGu- -3'
miRNA:   3'- -GUCUGuGGCUGCGGAGC-CG--UGGCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.