miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 5' -49.9 NC_005259.1 + 33718 0.66 0.9774
Target:  5'- cGGAUUCuGCGCGAUGaUGUcgCG-UGGa -3'
miRNA:   3'- -UCUAGGuUGUGCUGC-ACGuaGCuACC- -5'
23264 5' -49.9 NC_005259.1 + 15581 0.66 0.971763
Target:  5'- cGGggCCAGCGCGACGgGCcgC-AUGa -3'
miRNA:   3'- -UCuaGGUUGUGCUGCaCGuaGcUACc -5'
23264 5' -49.9 NC_005259.1 + 61556 0.66 0.965532
Target:  5'- gAGAaugCCGACACGGCaccgGCAguugaggaucucaugCGGUGGg -3'
miRNA:   3'- -UCUa--GGUUGUGCUGca--CGUa--------------GCUACC- -5'
23264 5' -49.9 NC_005259.1 + 23815 0.66 0.965179
Target:  5'- aGGAgacagCCAcCAUGACG-GCAaUCGAUGa -3'
miRNA:   3'- -UCUa----GGUuGUGCUGCaCGU-AGCUACc -5'
23264 5' -49.9 NC_005259.1 + 20672 0.66 0.965179
Target:  5'- aGGAcgCCAugAUGugGUcGCAcggcacgcgcUCGGUGGu -3'
miRNA:   3'- -UCUa-GGUugUGCugCA-CGU----------AGCUACC- -5'
23264 5' -49.9 NC_005259.1 + 66912 0.67 0.961512
Target:  5'- uAGAUCCGGCAgCGcGCGgUGC-UCGAccgGGg -3'
miRNA:   3'- -UCUAGGUUGU-GC-UGC-ACGuAGCUa--CC- -5'
23264 5' -49.9 NC_005259.1 + 11045 0.67 0.961131
Target:  5'- uGGUCaCcGCAUGACGUGCcgAUCGGcucagcgUGGa -3'
miRNA:   3'- uCUAG-GuUGUGCUGCACG--UAGCU-------ACC- -5'
23264 5' -49.9 NC_005259.1 + 23307 0.67 0.953393
Target:  5'- gGGGUCCGGCGCGGuCG-GUGUCGccGa -3'
miRNA:   3'- -UCUAGGUUGUGCU-GCaCGUAGCuaCc -5'
23264 5' -49.9 NC_005259.1 + 13720 0.68 0.9283
Target:  5'- ---aCCGACAauCGAgGUGCcgUGAUGGc -3'
miRNA:   3'- ucuaGGUUGU--GCUgCACGuaGCUACC- -5'
23264 5' -49.9 NC_005259.1 + 41365 0.69 0.909864
Target:  5'- ---cCCAGCACaGCGUGCgGUCGAgcuUGGc -3'
miRNA:   3'- ucuaGGUUGUGcUGCACG-UAGCU---ACC- -5'
23264 5' -49.9 NC_005259.1 + 38964 0.69 0.903157
Target:  5'- gAGAgCCuGCACGAUG-GCAUCGcgGa -3'
miRNA:   3'- -UCUaGGuUGUGCUGCaCGUAGCuaCc -5'
23264 5' -49.9 NC_005259.1 + 50154 0.71 0.830987
Target:  5'- cGAUCCGGCGCG-UGaGCGagCGGUGGa -3'
miRNA:   3'- uCUAGGUUGUGCuGCaCGUa-GCUACC- -5'
23264 5' -49.9 NC_005259.1 + 64933 0.71 0.792991
Target:  5'- cGAgugCCAGCGCGAgGgugGCcggguuGUCGAUGGu -3'
miRNA:   3'- uCUa--GGUUGUGCUgCa--CG------UAGCUACC- -5'
23264 5' -49.9 NC_005259.1 + 34020 0.73 0.698598
Target:  5'- -uAUCCGGCcucgGCGGCGUGCGUCGGc-- -3'
miRNA:   3'- ucUAGGUUG----UGCUGCACGUAGCUacc -5'
23264 5' -49.9 NC_005259.1 + 68198 0.8 0.35697
Target:  5'- cGAagCCAGCAUGGCGUGCuucugcUCGGUGGa -3'
miRNA:   3'- uCUa-GGUUGUGCUGCACGu-----AGCUACC- -5'
23264 5' -49.9 NC_005259.1 + 32251 1.13 0.003075
Target:  5'- gAGAUCCAACACGACGUGCAUCGAUGGg -3'
miRNA:   3'- -UCUAGGUUGUGCUGCACGUAGCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.