miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23265 3' -50.9 NC_005259.1 + 5090 0.66 0.964951
Target:  5'- cGGUGUcACCGGCGAUcugcGUagACCGcguuGACc -3'
miRNA:   3'- -CCACAcUGGCUGCUA----CAa-UGGCu---CUG- -5'
23265 3' -50.9 NC_005259.1 + 53632 0.66 0.961303
Target:  5'- cGGUGccguUGGCCGcuuccugcACGuUGUacggGCCGAGGCc -3'
miRNA:   3'- -CCAC----ACUGGC--------UGCuACAa---UGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 38375 0.66 0.961303
Target:  5'- ----cGugCGACGAccauguUGUUGCCGGuGGCa -3'
miRNA:   3'- ccacaCugGCUGCU------ACAAUGGCU-CUG- -5'
23265 3' -50.9 NC_005259.1 + 41181 0.66 0.9574
Target:  5'- aGGUGUGAauugaUCGAUGGUGaUGCCGuugucgguguGGAUc -3'
miRNA:   3'- -CCACACU-----GGCUGCUACaAUGGC----------UCUG- -5'
23265 3' -50.9 NC_005259.1 + 53549 0.66 0.948807
Target:  5'- cGGUGUcGGCUcgGGCGGUGcgauCCGAGuACg -3'
miRNA:   3'- -CCACA-CUGG--CUGCUACaau-GGCUC-UG- -5'
23265 3' -50.9 NC_005259.1 + 11294 0.66 0.944108
Target:  5'- aGGacgGUcGACgGGCG-UGagGCCGAGACg -3'
miRNA:   3'- -CCa--CA-CUGgCUGCuACaaUGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 39051 0.67 0.939136
Target:  5'- cGGgau-GuuGGCGAUGUUGCCGAG-Cu -3'
miRNA:   3'- -CCacacUggCUGCUACAAUGGCUCuG- -5'
23265 3' -50.9 NC_005259.1 + 42511 0.67 0.93759
Target:  5'- cGGUGUGGCCaGCagccguccggccccGAUGggcACCGAGGu -3'
miRNA:   3'- -CCACACUGGcUG--------------CUACaa-UGGCUCUg -5'
23265 3' -50.9 NC_005259.1 + 60629 0.67 0.915856
Target:  5'- aGGUGUGGaacugcgcguaguUCGACGGUGauuUCGGGGCc -3'
miRNA:   3'- -CCACACU-------------GGCUGCUACaauGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 2151 0.67 0.913969
Target:  5'- cGGUGcUGGCCaGCGGcgucgagccgccgGUUGCCGAGGu -3'
miRNA:   3'- -CCAC-ACUGGcUGCUa------------CAAUGGCUCUg -5'
23265 3' -50.9 NC_005259.1 + 15139 0.68 0.910122
Target:  5'- aGGUGUacggGGCCaccuCGGUGgccgagGCCGAGGCc -3'
miRNA:   3'- -CCACA----CUGGcu--GCUACaa----UGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 64423 0.69 0.857325
Target:  5'- --cGUGagggaucGCCGACGAgc-UGCCGGGGCg -3'
miRNA:   3'- ccaCAC-------UGGCUGCUacaAUGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 31668 0.69 0.849732
Target:  5'- ---uUGACCucGACGggGUUGcCCGAGGCa -3'
miRNA:   3'- ccacACUGG--CUGCuaCAAU-GGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 40458 0.7 0.823112
Target:  5'- cGGUGUGGuuGACGuac-UGCCGGGcCg -3'
miRNA:   3'- -CCACACUggCUGCuacaAUGGCUCuG- -5'
23265 3' -50.9 NC_005259.1 + 41982 0.7 0.813823
Target:  5'- cGGUGaucucagGACCGGCGGUGaggaccacACCGuGGCg -3'
miRNA:   3'- -CCACa------CUGGCUGCUACaa------UGGCuCUG- -5'
23265 3' -50.9 NC_005259.1 + 8948 0.71 0.784846
Target:  5'- cGGUGggcgcGCCGugGAcgGgcaccgUGCCGGGACg -3'
miRNA:   3'- -CCACac---UGGCugCUa-Ca-----AUGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 27882 0.71 0.784846
Target:  5'- gGGUGUGcACC-ACGAUccaccugggGUcGCCGAGACc -3'
miRNA:   3'- -CCACAC-UGGcUGCUA---------CAaUGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 26819 0.77 0.454649
Target:  5'- cGGU---ACCGGCGGUGgUGCCGGGGCg -3'
miRNA:   3'- -CCAcacUGGCUGCUACaAUGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 24226 0.8 0.305205
Target:  5'- --cGUGACCGGCGGg---GCCGAGGCa -3'
miRNA:   3'- ccaCACUGGCUGCUacaaUGGCUCUG- -5'
23265 3' -50.9 NC_005259.1 + 31352 1.12 0.002738
Target:  5'- cGGUGUGACCGACGAUGUUACCGAGACc -3'
miRNA:   3'- -CCACACUGGCUGCUACAAUGGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.