miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23265 5' -56.9 NC_005259.1 + 1580 0.66 0.680943
Target:  5'- cGCGCCCCacaccgaGGUcGAgGUCaGGGCACAa- -3'
miRNA:   3'- -CGUGGGG-------CCA-CUgUAGcCUCGUGUcg -5'
23265 5' -56.9 NC_005259.1 + 2288 0.67 0.650141
Target:  5'- gGCuAUCCCGGUuucuGAUacaGUCGGcauucuGGUACAGCg -3'
miRNA:   3'- -CG-UGGGGCCA----CUG---UAGCC------UCGUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 4531 0.67 0.637344
Target:  5'- gGCACCCCGGUcGAUugugcccagugCGG-GCACGa- -3'
miRNA:   3'- -CGUGGGGCCA-CUGua---------GCCuCGUGUcg -5'
23265 5' -56.9 NC_005259.1 + 7867 0.68 0.565143
Target:  5'- -gACCCCGGUGGCccgagugcUUGGAcucGgGCAGCc -3'
miRNA:   3'- cgUGGGGCCACUGu-------AGCCU---CgUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 8968 0.68 0.596849
Target:  5'- gGCACCgugCCGG-GACGUaGGuGC-CAGCg -3'
miRNA:   3'- -CGUGG---GGCCaCUGUAgCCuCGuGUCG- -5'
23265 5' -56.9 NC_005259.1 + 15560 0.74 0.267002
Target:  5'- cCACCCUcaGGUGGCcacccUCGGGGC-CAGCg -3'
miRNA:   3'- cGUGGGG--CCACUGu----AGCCUCGuGUCG- -5'
23265 5' -56.9 NC_005259.1 + 16238 0.66 0.671412
Target:  5'- cGCACCCCGGUGcugcGCAcCGaccGAGCAgAu- -3'
miRNA:   3'- -CGUGGGGCCAC----UGUaGC---CUCGUgUcg -5'
23265 5' -56.9 NC_005259.1 + 16699 0.66 0.703032
Target:  5'- gGCACCgaGGUGACcgCcGAGCAgGucGCg -3'
miRNA:   3'- -CGUGGggCCACUGuaGcCUCGUgU--CG- -5'
23265 5' -56.9 NC_005259.1 + 23275 0.66 0.692544
Target:  5'- aGCACCaagaccgggcgCGGUGGuugggUAUCGGGGUcCGGCg -3'
miRNA:   3'- -CGUGGg----------GCCACU-----GUAGCCUCGuGUCG- -5'
23265 5' -56.9 NC_005259.1 + 25989 0.68 0.607485
Target:  5'- aGCGCCgaGGUGaACAaCGGAaGUAgCAGCg -3'
miRNA:   3'- -CGUGGggCCAC-UGUaGCCU-CGU-GUCG- -5'
23265 5' -56.9 NC_005259.1 + 27373 0.69 0.503278
Target:  5'- gGUGCCCggcaCGGUGACcggcggcgguGUCGGcAGCgGCGGCa -3'
miRNA:   3'- -CGUGGG----GCCACUG----------UAGCC-UCG-UGUCG- -5'
23265 5' -56.9 NC_005259.1 + 29946 0.67 0.628807
Target:  5'- cGCGgCCCGGUcGCGgcuggUGGGGCggGCGGUg -3'
miRNA:   3'- -CGUgGGGCCAcUGUa----GCCUCG--UGUCG- -5'
23265 5' -56.9 NC_005259.1 + 31387 1.14 0.000429
Target:  5'- aGCACCCCGGUGACAUCGGAGCACAGCg -3'
miRNA:   3'- -CGUGGGGCCACUGUAGCCUCGUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 32558 0.67 0.660789
Target:  5'- cCGCCCCGGcGAgCG-CGGGG-AUAGCg -3'
miRNA:   3'- cGUGGGGCCaCU-GUaGCCUCgUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 38614 0.67 0.639477
Target:  5'- -gACCuuGGUGaACAUCGaGGGCGguGa -3'
miRNA:   3'- cgUGGggCCAC-UGUAGC-CUCGUguCg -5'
23265 5' -56.9 NC_005259.1 + 41263 0.66 0.691491
Target:  5'- cCGCCCCGGUcGAgcacccuCGUCGGcGCACu-- -3'
miRNA:   3'- cGUGGGGCCA-CU-------GUAGCCuCGUGucg -5'
23265 5' -56.9 NC_005259.1 + 42542 0.66 0.682
Target:  5'- gGCACCgaGGUGGCGggcagcUCGGcGaGCAGCc -3'
miRNA:   3'- -CGUGGggCCACUGU------AGCCuCgUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 48045 0.75 0.241633
Target:  5'- cCACCCCGGUGGCcacggCGGguAGCGCcGCc -3'
miRNA:   3'- cGUGGGGCCACUGua---GCC--UCGUGuCG- -5'
23265 5' -56.9 NC_005259.1 + 49445 0.67 0.660789
Target:  5'- cCGCCuuGGUcGGCAgcCGGAuGCcCAGCa -3'
miRNA:   3'- cGUGGggCCA-CUGUa-GCCU-CGuGUCG- -5'
23265 5' -56.9 NC_005259.1 + 50410 0.66 0.723805
Target:  5'- aGCGCgCCGGUGccuugaccgGC-UCGGgcAGCGguGCg -3'
miRNA:   3'- -CGUGgGGCCAC---------UGuAGCC--UCGUguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.