miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23266 3' -55.1 NC_005259.1 + 30814 0.66 0.786727
Target:  5'- cUGAGUCggguaGUCCGgcG-CGCCGA-GGUCg -3'
miRNA:   3'- -ACUCAG-----CGGGCuaCaGCGGCUaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 43072 0.66 0.776943
Target:  5'- gUGAGgaacgcgaGCCCGuUGcCGCCGAacagucccgUGGUCa -3'
miRNA:   3'- -ACUCag------CGGGCuACaGCGGCU---------ACUAG- -5'
23266 3' -55.1 NC_005259.1 + 27328 0.66 0.767013
Target:  5'- cGGGUUGCCuCGGUaGagcauccaaUCGCCGuacUGAUCg -3'
miRNA:   3'- aCUCAGCGG-GCUA-C---------AGCGGCu--ACUAG- -5'
23266 3' -55.1 NC_005259.1 + 22984 0.66 0.767013
Target:  5'- ----gUGCCCGGUGUCgacgccGCCGA-GGUCa -3'
miRNA:   3'- acucaGCGGGCUACAG------CGGCUaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 31169 0.66 0.76099
Target:  5'- cGAGcUCGCCCuuGAgccagucggcgaggaUGcCGCCGAaGAUCg -3'
miRNA:   3'- aCUC-AGCGGG--CU---------------ACaGCGGCUaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 26266 0.66 0.756949
Target:  5'- -cGGUCuCCaUGAUGUCGCCGGUGc-- -3'
miRNA:   3'- acUCAGcGG-GCUACAGCGGCUACuag -5'
23266 3' -55.1 NC_005259.1 + 11602 0.66 0.756949
Target:  5'- gGAGUuugcuggaaCGCUCGAUGUgGCCGuuuggGGUUa -3'
miRNA:   3'- aCUCA---------GCGGGCUACAgCGGCua---CUAG- -5'
23266 3' -55.1 NC_005259.1 + 31404 0.67 0.746761
Target:  5'- gGAGcacagCGcCCCGAgGUCGCCGcUGAg- -3'
miRNA:   3'- aCUCa----GC-GGGCUaCAGCGGCuACUag -5'
23266 3' -55.1 NC_005259.1 + 67150 0.67 0.740593
Target:  5'- gUGAGcCGCuuGucgaugguggcggccAUGcCGCCGAUGAUg -3'
miRNA:   3'- -ACUCaGCGggC---------------UACaGCGGCUACUAg -5'
23266 3' -55.1 NC_005259.1 + 31074 0.67 0.73646
Target:  5'- cGGGUCGgcgagguuCCCGAgcgCGUCGggGAUCa -3'
miRNA:   3'- aCUCAGC--------GGGCUacaGCGGCuaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 35273 0.67 0.726058
Target:  5'- --cGcCGCgCCGggGUCGCCGAUGu-- -3'
miRNA:   3'- acuCaGCG-GGCuaCAGCGGCUACuag -5'
23266 3' -55.1 NC_005259.1 + 35527 0.67 0.726058
Target:  5'- cGGGcacacCGCCCGccGUCGCCGAUc--- -3'
miRNA:   3'- aCUCa----GCGGGCuaCAGCGGCUAcuag -5'
23266 3' -55.1 NC_005259.1 + 7309 0.67 0.704992
Target:  5'- uUGGGU-GCCCGAguucaccgccGUCGCCGAguacGUCg -3'
miRNA:   3'- -ACUCAgCGGGCUa---------CAGCGGCUac--UAG- -5'
23266 3' -55.1 NC_005259.1 + 14867 0.67 0.704992
Target:  5'- cGAGguucgcgcUGCCCGAgccGcCGCCGuAUGGUCa -3'
miRNA:   3'- aCUCa-------GCGGGCUa--CaGCGGC-UACUAG- -5'
23266 3' -55.1 NC_005259.1 + 46536 0.68 0.69435
Target:  5'- gGGGaUCGCCgaGAUcugGUCGCCGAccgcgccuaUGGUCg -3'
miRNA:   3'- aCUC-AGCGGg-CUA---CAGCGGCU---------ACUAG- -5'
23266 3' -55.1 NC_005259.1 + 14733 0.68 0.690076
Target:  5'- --cGUCGCCgaGAUGUacgcgcuggccggGCCGGUGAUCc -3'
miRNA:   3'- acuCAGCGGg-CUACAg------------CGGCUACUAG- -5'
23266 3' -55.1 NC_005259.1 + 61503 0.68 0.672902
Target:  5'- uUGAGgCGCUCGGUGU-GCCGGUcGAccUCg -3'
miRNA:   3'- -ACUCaGCGGGCUACAgCGGCUA-CU--AG- -5'
23266 3' -55.1 NC_005259.1 + 53259 0.68 0.672902
Target:  5'- --cGUCGCcgCCGcUGUCGCCGGUgccgccaaGAUCg -3'
miRNA:   3'- acuCAGCG--GGCuACAGCGGCUA--------CUAG- -5'
23266 3' -55.1 NC_005259.1 + 45397 0.68 0.672902
Target:  5'- gGGGUCGCcgCCGAgcgCGCUGAUGGc- -3'
miRNA:   3'- aCUCAGCG--GGCUacaGCGGCUACUag -5'
23266 3' -55.1 NC_005259.1 + 31679 0.68 0.651305
Target:  5'- gGGGUUGCCCGAggcauccUCGgCGGUGAc- -3'
miRNA:   3'- aCUCAGCGGGCUac-----AGCgGCUACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.