miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23266 3' -55.1 NC_005259.1 + 5077 0.7 0.533242
Target:  5'- cGGGUCGacgggCCGGUGUCaCCGgcGAUCu -3'
miRNA:   3'- aCUCAGCg----GGCUACAGcGGCuaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 5432 0.72 0.414361
Target:  5'- cGAGgucugCGCCCGcUGcCGCCGAcaGAUCg -3'
miRNA:   3'- aCUCa----GCGGGCuACaGCGGCUa-CUAG- -5'
23266 3' -55.1 NC_005259.1 + 6416 0.73 0.396155
Target:  5'- cUGAuGUgGCCCGAccUCGCCGAUG-UCg -3'
miRNA:   3'- -ACU-CAgCGGGCUacAGCGGCUACuAG- -5'
23266 3' -55.1 NC_005259.1 + 7309 0.67 0.704992
Target:  5'- uUGGGU-GCCCGAguucaccgccGUCGCCGAguacGUCg -3'
miRNA:   3'- -ACUCAgCGGGCUa---------CAGCGGCUac--UAG- -5'
23266 3' -55.1 NC_005259.1 + 8685 0.74 0.320879
Target:  5'- gGGGcCGCCuCGAUGUCGCUGucgaGGUCg -3'
miRNA:   3'- aCUCaGCGG-GCUACAGCGGCua--CUAG- -5'
23266 3' -55.1 NC_005259.1 + 10713 0.69 0.586403
Target:  5'- cGGGUaguugGCCCGcAUGaUGUCGGUGAUCa -3'
miRNA:   3'- aCUCAg----CGGGC-UACaGCGGCUACUAG- -5'
23266 3' -55.1 NC_005259.1 + 11442 0.68 0.640475
Target:  5'- uUGGGcCGCUCGcUGcCGCCGGUGccuAUCg -3'
miRNA:   3'- -ACUCaGCGGGCuACaGCGGCUAC---UAG- -5'
23266 3' -55.1 NC_005259.1 + 11602 0.66 0.756949
Target:  5'- gGAGUuugcuggaaCGCUCGAUGUgGCCGuuuggGGUUa -3'
miRNA:   3'- aCUCA---------GCGGGCUACAgCGGCua---CUAG- -5'
23266 3' -55.1 NC_005259.1 + 14733 0.68 0.690076
Target:  5'- --cGUCGCCgaGAUGUacgcgcuggccggGCCGGUGAUCc -3'
miRNA:   3'- acuCAGCGGg-CUACAg------------CGGCUACUAG- -5'
23266 3' -55.1 NC_005259.1 + 14867 0.67 0.704992
Target:  5'- cGAGguucgcgcUGCCCGAgccGcCGCCGuAUGGUCa -3'
miRNA:   3'- aCUCa-------GCGGGCUa--CaGCGGC-UACUAG- -5'
23266 3' -55.1 NC_005259.1 + 16666 0.68 0.640475
Target:  5'- gGGGUgacCGCCuCGAUGUgGUCGgcGAUCc -3'
miRNA:   3'- aCUCA---GCGG-GCUACAgCGGCuaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 18727 0.7 0.522803
Target:  5'- cGGGcCGCCCGGcaucgguaaGUCGUCGGUGGUg -3'
miRNA:   3'- aCUCaGCGGGCUa--------CAGCGGCUACUAg -5'
23266 3' -55.1 NC_005259.1 + 22984 0.66 0.767013
Target:  5'- ----gUGCCCGGUGUCgacgccGCCGA-GGUCa -3'
miRNA:   3'- acucaGCGGGCUACAG------CGGCUaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 23306 0.7 0.554335
Target:  5'- cGGGguccggCGCggUCGGUGUCGCCGAgccgGAUUa -3'
miRNA:   3'- aCUCa-----GCG--GGCUACAGCGGCUa---CUAG- -5'
23266 3' -55.1 NC_005259.1 + 26266 0.66 0.756949
Target:  5'- -cGGUCuCCaUGAUGUCGCCGGUGc-- -3'
miRNA:   3'- acUCAGcGG-GCUACAGCGGCUACuag -5'
23266 3' -55.1 NC_005259.1 + 27328 0.66 0.767013
Target:  5'- cGGGUUGCCuCGGUaGagcauccaaUCGCCGuacUGAUCg -3'
miRNA:   3'- aCUCAGCGG-GCUA-C---------AGCGGCu--ACUAG- -5'
23266 3' -55.1 NC_005259.1 + 28741 0.69 0.586403
Target:  5'- cGAGgguuacgCGCCCGAgcgugagaucGUCGCCGGUGc-- -3'
miRNA:   3'- aCUCa------GCGGGCUa---------CAGCGGCUACuag -5'
23266 3' -55.1 NC_005259.1 + 30814 0.66 0.786727
Target:  5'- cUGAGUCggguaGUCCGgcG-CGCCGA-GGUCg -3'
miRNA:   3'- -ACUCAG-----CGGGCuaCaGCGGCUaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 31074 0.67 0.73646
Target:  5'- cGGGUCGgcgagguuCCCGAgcgCGUCGggGAUCa -3'
miRNA:   3'- aCUCAGC--------GGGCUacaGCGGCuaCUAG- -5'
23266 3' -55.1 NC_005259.1 + 31114 1.11 0.0011
Target:  5'- aUGAGUCGCCCGAUGUCGCCGAUGAUCg -3'
miRNA:   3'- -ACUCAGCGGGCUACAGCGGCUACUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.