miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23266 5' -49.2 NC_005259.1 + 23320 0.66 0.987126
Target:  5'- gUCGGUGucgcCGAGcCGGauuacAUCGGGCUCg -3'
miRNA:   3'- -GGCUACua--GCUCuGCUa----UAGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 16510 0.66 0.987126
Target:  5'- gCCGA-GAgCGAGGCGcUG-CGAGCgUCg -3'
miRNA:   3'- -GGCUaCUaGCUCUGCuAUaGCUCG-AG- -5'
23266 5' -49.2 NC_005259.1 + 57980 0.66 0.987126
Target:  5'- gCCGG-GAUCGuGACcccgGUCGAGC-Ca -3'
miRNA:   3'- -GGCUaCUAGCuCUGcua-UAGCUCGaG- -5'
23266 5' -49.2 NC_005259.1 + 14635 0.66 0.987126
Target:  5'- aCGAUcaauugCGuGACGAUGgcgUGGGCUCa -3'
miRNA:   3'- gGCUAcua---GCuCUGCUAUa--GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 47343 0.66 0.987126
Target:  5'- cCCG-UGAUCGuuuuGAgGAUGUUGAGgaUCg -3'
miRNA:   3'- -GGCuACUAGCu---CUgCUAUAGCUCg-AG- -5'
23266 5' -49.2 NC_005259.1 + 5481 0.66 0.985337
Target:  5'- gCCGGUGcaauagcgcCGAG-CGAggAUCGAGCUa -3'
miRNA:   3'- -GGCUACua-------GCUCuGCUa-UAGCUCGAg -5'
23266 5' -49.2 NC_005259.1 + 59120 0.66 0.985337
Target:  5'- gCGcgGcAUCGAG-CaGAgcGUCGAGCUCg -3'
miRNA:   3'- gGCuaC-UAGCUCuG-CUa-UAGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 46982 0.66 0.985337
Target:  5'- gCCGAUGAUCGGGcCGAgggUGcGC-Ca -3'
miRNA:   3'- -GGCUACUAGCUCuGCUauaGCuCGaG- -5'
23266 5' -49.2 NC_005259.1 + 11304 0.66 0.983365
Target:  5'- aCGGgcgUGAggcCGAGACGGgcgCGcAGCUCg -3'
miRNA:   3'- gGCU---ACUa--GCUCUGCUauaGC-UCGAG- -5'
23266 5' -49.2 NC_005259.1 + 39043 0.66 0.981198
Target:  5'- gCGAUcAUCGGGauguugGCGAUGUugcCGAGCUUg -3'
miRNA:   3'- gGCUAcUAGCUC------UGCUAUA---GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 19681 0.66 0.981198
Target:  5'- cCCGGUcaGGUCGGGAuCGAg--CaGGCUCg -3'
miRNA:   3'- -GGCUA--CUAGCUCU-GCUauaGcUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 9180 0.66 0.981198
Target:  5'- gCCGAugcaaUGGUCGAGgucgucauACGGggccggAUCGAGCa- -3'
miRNA:   3'- -GGCU-----ACUAGCUC--------UGCUa-----UAGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 32881 0.66 0.978827
Target:  5'- gCGGUGAUCGAuucaccgggGGCGAgggUGAGC-Ca -3'
miRNA:   3'- gGCUACUAGCU---------CUGCUauaGCUCGaG- -5'
23266 5' -49.2 NC_005259.1 + 52738 0.67 0.976241
Target:  5'- gCCGAcgc-CGGGAuCGAUcugcacaacAUCGAGCUCg -3'
miRNA:   3'- -GGCUacuaGCUCU-GCUA---------UAGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 67582 0.67 0.972544
Target:  5'- aUGAUGAUCGAcgcgucgggcgcgaGACGuguUCGAGC-Ca -3'
miRNA:   3'- gGCUACUAGCU--------------CUGCuauAGCUCGaG- -5'
23266 5' -49.2 NC_005259.1 + 50415 0.67 0.970389
Target:  5'- gCCGGUGccuugaccggcUCGGGcaGCGGUG-CGGGCUCg -3'
miRNA:   3'- -GGCUACu----------AGCUC--UGCUAUaGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 19156 0.68 0.961326
Target:  5'- aCCGAUcagGGUCGAGguucgucggcgcucaACGGUGcccucgacagCGAGCUCg -3'
miRNA:   3'- -GGCUA---CUAGCUC---------------UGCUAUa---------GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 20273 0.68 0.955723
Target:  5'- gCCGAUgGAUCGuGGACGcgcuaccgCGAGUUCu -3'
miRNA:   3'- -GGCUA-CUAGC-UCUGCuaua----GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 56063 0.68 0.955723
Target:  5'- uUGAUGGcgUCGAGACc--GUCGAGCa- -3'
miRNA:   3'- gGCUACU--AGCUCUGcuaUAGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 60027 0.68 0.953162
Target:  5'- uUCGAUGAguUCGGcaACGAUGucguucggggucuucUCGGGCUCa -3'
miRNA:   3'- -GGCUACU--AGCUc-UGCUAU---------------AGCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.