miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23266 5' -49.2 NC_005259.1 + 57980 0.66 0.987126
Target:  5'- gCCGG-GAUCGuGACcccgGUCGAGC-Ca -3'
miRNA:   3'- -GGCUaCUAGCuCUGcua-UAGCUCGaG- -5'
23266 5' -49.2 NC_005259.1 + 26827 0.68 0.941927
Target:  5'- gCGGUGGUgcCGGGGCGGUcugcUCGGGCa- -3'
miRNA:   3'- gGCUACUA--GCUCUGCUAu---AGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 33335 0.68 0.941927
Target:  5'- gCGGaagUGAUCGGGGuCGAUgcaAUCGGGCg- -3'
miRNA:   3'- gGCU---ACUAGCUCU-GCUA---UAGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 31936 0.68 0.946802
Target:  5'- cUCGG-GGUCGAGGCGGUuaccUCGGGUg- -3'
miRNA:   3'- -GGCUaCUAGCUCUGCUAu---AGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 60027 0.68 0.953162
Target:  5'- uUCGAUGAguUCGGcaACGAUGucguucggggucuucUCGGGCUCa -3'
miRNA:   3'- -GGCUACU--AGCUc-UGCUAU---------------AGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 20273 0.68 0.955723
Target:  5'- gCCGAUgGAUCGuGGACGcgcuaccgCGAGUUCu -3'
miRNA:   3'- -GGCUA-CUAGC-UCUGCuaua----GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 56063 0.68 0.955723
Target:  5'- uUGAUGGcgUCGAGACc--GUCGAGCa- -3'
miRNA:   3'- gGCUACU--AGCUCUGcuaUAGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 19156 0.68 0.961326
Target:  5'- aCCGAUcagGGUCGAGguucgucggcgcucaACGGUGcccucgacagCGAGCUCg -3'
miRNA:   3'- -GGCUA---CUAGCUC---------------UGCUAUa---------GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 50415 0.67 0.970389
Target:  5'- gCCGGUGccuugaccggcUCGGGcaGCGGUG-CGGGCUCg -3'
miRNA:   3'- -GGCUACu----------AGCUC--UGCUAUaGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 1295 0.69 0.936771
Target:  5'- cCCGA-GGUCGAGcucuacGCGGUcgUGAGCg- -3'
miRNA:   3'- -GGCUaCUAGCUC------UGCUAuaGCUCGag -5'
23266 5' -49.2 NC_005259.1 + 32125 0.69 0.931331
Target:  5'- aCCGuUGAUCaccuuGGCGGUgauGUCGGGCUUa -3'
miRNA:   3'- -GGCuACUAGcu---CUGCUA---UAGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 23704 0.69 0.931331
Target:  5'- aCCGcgucGUGAUCGcgccGGACGGU-UCGGuGCUCa -3'
miRNA:   3'- -GGC----UACUAGC----UCUGCUAuAGCU-CGAG- -5'
23266 5' -49.2 NC_005259.1 + 58787 0.75 0.659648
Target:  5'- gCGccGGUCGAGGCGGUGauugccucggCGGGCUCg -3'
miRNA:   3'- gGCuaCUAGCUCUGCUAUa---------GCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 68692 0.74 0.714741
Target:  5'- cUCGAUGAUCGAGGCGGgcagcgcGUCGGuGCcCg -3'
miRNA:   3'- -GGCUACUAGCUCUGCUa------UAGCU-CGaG- -5'
23266 5' -49.2 NC_005259.1 + 27383 0.72 0.788009
Target:  5'- aCGGUGAcCGGcGGCGGUGUCGgcagcggcggcAGCUCg -3'
miRNA:   3'- gGCUACUaGCU-CUGCUAUAGC-----------UCGAG- -5'
23266 5' -49.2 NC_005259.1 + 39783 0.72 0.826469
Target:  5'- gCUGGUGAUCGGuGCGc---CGAGCUCa -3'
miRNA:   3'- -GGCUACUAGCUcUGCuauaGCUCGAG- -5'
23266 5' -49.2 NC_005259.1 + 33589 0.71 0.853147
Target:  5'- gUCGcgGGccacCGAGGCGcgGUCGAGCUg -3'
miRNA:   3'- -GGCuaCUa---GCUCUGCuaUAGCUCGAg -5'
23266 5' -49.2 NC_005259.1 + 40049 0.71 0.869756
Target:  5'- gCCGGUGAUCGGGuCGGUcgCGAu--- -3'
miRNA:   3'- -GGCUACUAGCUCuGCUAuaGCUcgag -5'
23266 5' -49.2 NC_005259.1 + 29792 0.7 0.899181
Target:  5'- cCCGGUGccucgguaccucaGUCGAGACGAgGUCGcuaAGCg- -3'
miRNA:   3'- -GGCUAC-------------UAGCUCUGCUaUAGC---UCGag -5'
23266 5' -49.2 NC_005259.1 + 18230 0.7 0.906735
Target:  5'- gCGAUGAcCgGAGACGGagauuUCGAGCUg -3'
miRNA:   3'- gGCUACUaG-CUCUGCUau---AGCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.