miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23267 3' -57.3 NC_005259.1 + 55912 0.66 0.70885
Target:  5'- gUCGCUGgccaGAcCGCUGGUCUGCUCg -3'
miRNA:   3'- gAGUGGCacacCU-GCGGCUAGACGGG- -5'
23267 3' -57.3 NC_005259.1 + 28231 0.68 0.540695
Target:  5'- -cCACCGUcGgcggcggGGugGUCGAUCacgauccauUGCCCg -3'
miRNA:   3'- gaGUGGCA-Ca------CCugCGGCUAG---------ACGGG- -5'
23267 3' -57.3 NC_005259.1 + 50091 0.68 0.540695
Target:  5'- gCUCGCCGa-UGGuGCGcCCGAggUUGCCCg -3'
miRNA:   3'- -GAGUGGCacACC-UGC-GGCUa-GACGGG- -5'
23267 3' -57.3 NC_005259.1 + 26821 0.68 0.551027
Target:  5'- -gUACCGgcgGUGG-UGCCGGggcggUCUGCUCg -3'
miRNA:   3'- gaGUGGCa--CACCuGCGGCU-----AGACGGG- -5'
23267 3' -57.3 NC_005259.1 + 57686 0.68 0.551027
Target:  5'- aUCgACCGUGgccaGGuuGCCGggCuUGCCCg -3'
miRNA:   3'- gAG-UGGCACa---CCugCGGCuaG-ACGGG- -5'
23267 3' -57.3 NC_005259.1 + 3853 0.68 0.571863
Target:  5'- -gCACCGUc--GACGCCGGUCgagcGCCUc -3'
miRNA:   3'- gaGUGGCAcacCUGCGGCUAGa---CGGG- -5'
23267 3' -57.3 NC_005259.1 + 997 0.67 0.60344
Target:  5'- --aGCCGUGUGGuguACG-CGAUacguaUGCCCu -3'
miRNA:   3'- gagUGGCACACC---UGCgGCUAg----ACGGG- -5'
23267 3' -57.3 NC_005259.1 + 19530 0.67 0.614023
Target:  5'- cCUCACCGccGUGcAgGCCGAcgcguaUGCCCg -3'
miRNA:   3'- -GAGUGGCa-CACcUgCGGCUag----ACGGG- -5'
23267 3' -57.3 NC_005259.1 + 22798 0.67 0.624619
Target:  5'- gCUCACCGa--GGGUGCCGAUUU-CCCg -3'
miRNA:   3'- -GAGUGGCacaCCUGCGGCUAGAcGGG- -5'
23267 3' -57.3 NC_005259.1 + 11036 0.68 0.53658
Target:  5'- uUCGCCGgGUGGucaccgcaugacgUGCCGAUCgGCUCa -3'
miRNA:   3'- gAGUGGCaCACCu------------GCGGCUAGaCGGG- -5'
23267 3' -57.3 NC_005259.1 + 15995 0.69 0.530428
Target:  5'- aUCACCGcc-GGugGCCGcAUCcUGCCg -3'
miRNA:   3'- gAGUGGCacaCCugCGGC-UAG-ACGGg -5'
23267 3' -57.3 NC_005259.1 + 52324 0.69 0.529406
Target:  5'- aUCACCucGUGGcucggacACGCCGGUgUGCCg -3'
miRNA:   3'- gAGUGGcaCACC-------UGCGGCUAgACGGg -5'
23267 3' -57.3 NC_005259.1 + 35277 0.74 0.266067
Target:  5'- -gCGCCGg--GGuCGCCGAUgUGCCCc -3'
miRNA:   3'- gaGUGGCacaCCuGCGGCUAgACGGG- -5'
23267 3' -57.3 NC_005259.1 + 2682 0.73 0.303323
Target:  5'- aCUCGCCG-GUccgcaucgaGGAcaaggacgguuucacCGCCGAUCUGCUCa -3'
miRNA:   3'- -GAGUGGCaCA---------CCU---------------GCGGCUAGACGGG- -5'
23267 3' -57.3 NC_005259.1 + 17905 0.72 0.345264
Target:  5'- -gCGCCGaugcgUGUGGAUGcCCGGUCUggaccgcGCCCg -3'
miRNA:   3'- gaGUGGC-----ACACCUGC-GGCUAGA-------CGGG- -5'
23267 3' -57.3 NC_005259.1 + 64420 0.71 0.414271
Target:  5'- --aGCCGUGagGGAuCGCCGAcgagCUGCCg -3'
miRNA:   3'- gagUGGCACa-CCU-GCGGCUa---GACGGg -5'
23267 3' -57.3 NC_005259.1 + 21064 0.7 0.46088
Target:  5'- -cCAUCGUGUGGACGCguaugccgcuguCGAcgCUGgCCa -3'
miRNA:   3'- gaGUGGCACACCUGCG------------GCUa-GACgGG- -5'
23267 3' -57.3 NC_005259.1 + 33237 0.7 0.46088
Target:  5'- gUCACCGcGUacgUGCCaGAUCUGCCCg -3'
miRNA:   3'- gAGUGGCaCAccuGCGG-CUAGACGGG- -5'
23267 3' -57.3 NC_005259.1 + 37576 0.69 0.500084
Target:  5'- gCUCGCCGccc--GCGCCGAUCUGCa- -3'
miRNA:   3'- -GAGUGGCacaccUGCGGCUAGACGgg -5'
23267 3' -57.3 NC_005259.1 + 6430 0.69 0.506094
Target:  5'- cCUCGCCGaUGUcGGcaccgucGCGCUGAUCggcagcgucgccggUGCCCu -3'
miRNA:   3'- -GAGUGGC-ACA-CC-------UGCGGCUAG--------------ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.