miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23267 5' -54.1 NC_005259.1 + 12504 0.68 0.736461
Target:  5'- gGCGuAGccGCUGGGCCgcucggCUAcCCGUAGa -3'
miRNA:   3'- -CGC-UCuuUGGCCCGGa-----GAU-GGCAUCg -5'
23267 5' -54.1 NC_005259.1 + 44336 0.68 0.735425
Target:  5'- cGCGuAGcuGCCGGGCUUguuccacggcucgUUGCCGaGGCu -3'
miRNA:   3'- -CGC-UCuuUGGCCCGGA-------------GAUGGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 47814 0.68 0.715565
Target:  5'- cGCGAGAccuCgCGGGCCaccgCUGCCGcugacgguGCg -3'
miRNA:   3'- -CGCUCUuu-G-GCCCGGa---GAUGGCau------CG- -5'
23267 5' -54.1 NC_005259.1 + 67247 0.68 0.715565
Target:  5'- -aGGGGuugAGCgGGGCCUCgggcaGCCGUGucGCg -3'
miRNA:   3'- cgCUCU---UUGgCCCGGAGa----UGGCAU--CG- -5'
23267 5' -54.1 NC_005259.1 + 50407 0.69 0.68365
Target:  5'- cCGAGcgcGCCGGuGCCUUgACCGgcucgGGCa -3'
miRNA:   3'- cGCUCuu-UGGCC-CGGAGaUGGCa----UCG- -5'
23267 5' -54.1 NC_005259.1 + 67937 0.69 0.68365
Target:  5'- cGCGAGGaugaucuugcgGugCGGGUUg-UGCUGUAGCg -3'
miRNA:   3'- -CGCUCU-----------UugGCCCGGagAUGGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 3701 0.69 0.662117
Target:  5'- aGCuuGAGACCGGcGaCCUCUuCCGUAuccGCa -3'
miRNA:   3'- -CGcuCUUUGGCC-C-GGAGAuGGCAU---CG- -5'
23267 5' -54.1 NC_005259.1 + 35984 0.7 0.617721
Target:  5'- gGCGGGAAACCGacggcgaGGCCggaCUGCaccgagGUGGCc -3'
miRNA:   3'- -CGCUCUUUGGC-------CCGGa--GAUGg-----CAUCG- -5'
23267 5' -54.1 NC_005259.1 + 25815 0.7 0.617721
Target:  5'- gGCGAGAccgauauaggucuGACCGGGCCa-UACCucgcggauGUGGUa -3'
miRNA:   3'- -CGCUCU-------------UUGGCCCGGagAUGG--------CAUCG- -5'
23267 5' -54.1 NC_005259.1 + 65271 0.7 0.607981
Target:  5'- gGCGAGGguGugUGGGUg-CUGCCGUGGa -3'
miRNA:   3'- -CGCUCU--UugGCCCGgaGAUGGCAUCg -5'
23267 5' -54.1 NC_005259.1 + 44978 0.7 0.607981
Target:  5'- cCGAG-GGCCGGuGCgaCUGCCGaGGCa -3'
miRNA:   3'- cGCUCuUUGGCC-CGgaGAUGGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 49426 0.71 0.575666
Target:  5'- aGCGAGAAACCGGcgagcgccGCCUUggucggcaGCCGgauGCc -3'
miRNA:   3'- -CGCUCUUUGGCC--------CGGAGa-------UGGCau-CG- -5'
23267 5' -54.1 NC_005259.1 + 35626 0.71 0.554335
Target:  5'- uCGAGuaguUCGGGCCgccgccgCUGCCGcUGGCg -3'
miRNA:   3'- cGCUCuuu-GGCCCGGa------GAUGGC-AUCG- -5'
23267 5' -54.1 NC_005259.1 + 25612 0.72 0.533243
Target:  5'- aGCGAGGauGACaaGGCgCUCUACCagcaGUGGCg -3'
miRNA:   3'- -CGCUCU--UUGgcCCG-GAGAUGG----CAUCG- -5'
23267 5' -54.1 NC_005259.1 + 25973 0.72 0.533243
Target:  5'- uGCGAuGAGACCGGGCagc-GCCGaGGUg -3'
miRNA:   3'- -CGCU-CUUUGGCCCGgagaUGGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 8390 0.73 0.462036
Target:  5'- gGCGAGAgccucggcgAGCCGGGCCaccucgCUGgCG-AGCa -3'
miRNA:   3'- -CGCUCU---------UUGGCCCGGa-----GAUgGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 51438 0.73 0.462036
Target:  5'- gGCGGGccACgGGGCCUCgcGCCGauagAGCu -3'
miRNA:   3'- -CGCUCuuUGgCCCGGAGa-UGGCa---UCG- -5'
23267 5' -54.1 NC_005259.1 + 63713 0.74 0.414361
Target:  5'- aGCGGGGAuCgGGGCCUgCgcaGCCgGUAGCg -3'
miRNA:   3'- -CGCUCUUuGgCCCGGA-Ga--UGG-CAUCG- -5'
23267 5' -54.1 NC_005259.1 + 46278 0.74 0.405194
Target:  5'- cGCGAGGuucugcaacAGCgGGGCC---GCCGUGGCu -3'
miRNA:   3'- -CGCUCU---------UUGgCCCGGagaUGGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 32091 0.75 0.356292
Target:  5'- cCGAGAAACCGGGCgguggcgggaaauagCUCUcACCGUugaucaccuuGGCg -3'
miRNA:   3'- cGCUCUUUGGCCCG---------------GAGA-UGGCA----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.