miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23267 5' -54.1 NC_005259.1 + 3701 0.69 0.662117
Target:  5'- aGCuuGAGACCGGcGaCCUCUuCCGUAuccGCa -3'
miRNA:   3'- -CGcuCUUUGGCC-C-GGAGAuGGCAU---CG- -5'
23267 5' -54.1 NC_005259.1 + 5499 0.65 0.865794
Target:  5'- aGCGAGGAucgagcuacgcgcGCCGcGCC-CgcaaGCUGUGGCu -3'
miRNA:   3'- -CGCUCUU-------------UGGCcCGGaGa---UGGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 6102 0.66 0.824203
Target:  5'- cCGAGAucGCCGaGGCCgagGCCGccGCu -3'
miRNA:   3'- cGCUCUu-UGGC-CCGGagaUGGCauCG- -5'
23267 5' -54.1 NC_005259.1 + 8390 0.73 0.462036
Target:  5'- gGCGAGAgccucggcgAGCCGGGCCaccucgCUGgCG-AGCa -3'
miRNA:   3'- -CGCUCU---------UUGGCCCGGa-----GAUgGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 8636 0.68 0.767013
Target:  5'- gGCGAGAAuggCGGGCaCgagGCUGUGGUc -3'
miRNA:   3'- -CGCUCUUug-GCCCG-GagaUGGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 9280 0.66 0.841805
Target:  5'- gGCGAGuuAugCGGuGCCgccacgCUcgucCCGUAGCc -3'
miRNA:   3'- -CGCUCu-UugGCC-CGGa-----GAu---GGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 9547 0.68 0.767013
Target:  5'- -gGAGAGcuGCCcGGCCUCgACCGcgucGGCg -3'
miRNA:   3'- cgCUCUU--UGGcCCGGAGaUGGCa---UCG- -5'
23267 5' -54.1 NC_005259.1 + 11432 0.67 0.805818
Target:  5'- aCGGGGAugCuuGGGCCgcucgCUGCCGccGGUg -3'
miRNA:   3'- cGCUCUUugG--CCCGGa----GAUGGCa-UCG- -5'
23267 5' -54.1 NC_005259.1 + 12032 0.66 0.85029
Target:  5'- uGCGGGcggcAACCGGuaCUC-ACCGaGGCc -3'
miRNA:   3'- -CGCUCu---UUGGCCcgGAGaUGGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 12504 0.68 0.736461
Target:  5'- gGCGuAGccGCUGGGCCgcucggCUAcCCGUAGa -3'
miRNA:   3'- -CGC-UCuuUGGCCCGGa-----GAU-GGCAUCg -5'
23267 5' -54.1 NC_005259.1 + 13211 0.68 0.756949
Target:  5'- aGCGGGGccAGCggUGGGCCUCgaccggccACCGUgagGGCc -3'
miRNA:   3'- -CGCUCU--UUG--GCCCGGAGa-------UGGCA---UCG- -5'
23267 5' -54.1 NC_005259.1 + 17757 0.67 0.786727
Target:  5'- cGUGAGGccgccgcgcGCCGGGCCgagCgcACCG-AGCg -3'
miRNA:   3'- -CGCUCUu--------UGGCCCGGa--Ga-UGGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 17826 0.66 0.832225
Target:  5'- aGCGAGGccaucgacgggugGGCCGaGGCCacc-CCGUGGUc -3'
miRNA:   3'- -CGCUCU-------------UUGGC-CCGGagauGGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 20107 0.66 0.824203
Target:  5'- gGUGAGccGCCGucucaaGGCCgcacuggCUGCCGUcGCg -3'
miRNA:   3'- -CGCUCuuUGGC------CCGGa------GAUGGCAuCG- -5'
23267 5' -54.1 NC_005259.1 + 24191 0.68 0.736461
Target:  5'- gGCGAGAucGACCGGGUCaUCgagACCa---- -3'
miRNA:   3'- -CGCUCU--UUGGCCCGG-AGa--UGGcaucg -5'
23267 5' -54.1 NC_005259.1 + 25504 0.68 0.767013
Target:  5'- cGUGAGGgcaAAaaGGcCCUCgACCGUGGCa -3'
miRNA:   3'- -CGCUCU---UUggCCcGGAGaUGGCAUCG- -5'
23267 5' -54.1 NC_005259.1 + 25612 0.72 0.533243
Target:  5'- aGCGAGGauGACaaGGCgCUCUACCagcaGUGGCg -3'
miRNA:   3'- -CGCUCU--UUGgcCCG-GAGAUGG----CAUCG- -5'
23267 5' -54.1 NC_005259.1 + 25815 0.7 0.617721
Target:  5'- gGCGAGAccgauauaggucuGACCGGGCCa-UACCucgcggauGUGGUa -3'
miRNA:   3'- -CGCUCU-------------UUGGCCCGGagAUGG--------CAUCG- -5'
23267 5' -54.1 NC_005259.1 + 25973 0.72 0.533243
Target:  5'- uGCGAuGAGACCGGGCagc-GCCGaGGUg -3'
miRNA:   3'- -CGCU-CUUUGGCCCGgagaUGGCaUCG- -5'
23267 5' -54.1 NC_005259.1 + 30386 1.13 0.001068
Target:  5'- gGCGAGAAACCGGGCCUCUACCGUAGCc -3'
miRNA:   3'- -CGCUCUUUGGCCCGGAGAUGGCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.