miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23268 3' -55.2 NC_005259.1 + 14585 0.66 0.794759
Target:  5'- cCAUCGcGCUgGCCACCGacaucgagaccCCCGGUcUCg -3'
miRNA:   3'- cGUAGCuUGA-CGGUGGC-----------GGGCUAcAG- -5'
23268 3' -55.2 NC_005259.1 + 46578 0.66 0.785097
Target:  5'- gGCGUCGAcCg--CGCCGCCCGAg--- -3'
miRNA:   3'- -CGUAGCUuGacgGUGGCGGGCUacag -5'
23268 3' -55.2 NC_005259.1 + 1436 0.66 0.785097
Target:  5'- uGC-UCGGGCUGgCACUGCUCGcGUGcuUCg -3'
miRNA:   3'- -CGuAGCUUGACgGUGGCGGGC-UAC--AG- -5'
23268 3' -55.2 NC_005259.1 + 33447 0.66 0.785097
Target:  5'- cGC-UCGGugUGacCCACgUGCCgGGUGUCu -3'
miRNA:   3'- -CGuAGCUugAC--GGUG-GCGGgCUACAG- -5'
23268 3' -55.2 NC_005259.1 + 48007 0.66 0.785097
Target:  5'- gGCuugugUGAGCUGCugCACCGCgcccaCGAUGUUg -3'
miRNA:   3'- -CGua---GCUUGACG--GUGGCGg----GCUACAG- -5'
23268 3' -55.2 NC_005259.1 + 41380 0.66 0.779224
Target:  5'- -gGUCGAGCUuggccgguacccaugGCgCGCCGCUCGggGUg -3'
miRNA:   3'- cgUAGCUUGA---------------CG-GUGGCGGGCuaCAg -5'
23268 3' -55.2 NC_005259.1 + 17784 0.66 0.77528
Target:  5'- cGCAcCGAGCgUGCgCACCGCgauagcgaggCCGGUGa- -3'
miRNA:   3'- -CGUaGCUUG-ACG-GUGGCG----------GGCUACag -5'
23268 3' -55.2 NC_005259.1 + 43433 0.66 0.77528
Target:  5'- cGC-UCG-ACUGgCugCGCUCGAUGa- -3'
miRNA:   3'- -CGuAGCuUGACgGugGCGGGCUACag -5'
23268 3' -55.2 NC_005259.1 + 3134 0.66 0.76532
Target:  5'- gGCAgCGGAC-GgCACCGCCCG-UGg- -3'
miRNA:   3'- -CGUaGCUUGaCgGUGGCGGGCuACag -5'
23268 3' -55.2 NC_005259.1 + 22597 0.66 0.76532
Target:  5'- cGCgAUCaAGCUGCacgccgccgacCGCCGCCCGAUcaucuucgccgcGUCg -3'
miRNA:   3'- -CG-UAGcUUGACG-----------GUGGCGGGCUA------------CAG- -5'
23268 3' -55.2 NC_005259.1 + 26498 0.66 0.76532
Target:  5'- cGCcgCGAGCU--CGCCGCCCGgcGa- -3'
miRNA:   3'- -CGuaGCUUGAcgGUGGCGGGCuaCag -5'
23268 3' -55.2 NC_005259.1 + 44370 0.66 0.76532
Target:  5'- ---cCGAgGCUcGCCacACCGCCCauGAUGUCg -3'
miRNA:   3'- cguaGCU-UGA-CGG--UGGCGGG--CUACAG- -5'
23268 3' -55.2 NC_005259.1 + 31745 0.66 0.764316
Target:  5'- uGCcgCGAgcGCUGguguccCCACCGCCCcgucaucGAUGUg -3'
miRNA:   3'- -CGuaGCU--UGAC------GGUGGCGGG-------CUACAg -5'
23268 3' -55.2 NC_005259.1 + 44138 0.66 0.759279
Target:  5'- uGCGUUGAGCgagGUgaacgugcggucgagCAgCGCgCCGGUGUCg -3'
miRNA:   3'- -CGUAGCUUGa--CG---------------GUgGCG-GGCUACAG- -5'
23268 3' -55.2 NC_005259.1 + 23899 0.66 0.755227
Target:  5'- ---cCGAGCcGCCG-CGCCCGccGUCg -3'
miRNA:   3'- cguaGCUUGaCGGUgGCGGGCuaCAG- -5'
23268 3' -55.2 NC_005259.1 + 63159 0.66 0.75421
Target:  5'- aCGUUGAGCaGCCGCCGCagcgccgCCGAgGUg -3'
miRNA:   3'- cGUAGCUUGaCGGUGGCG-------GGCUaCAg -5'
23268 3' -55.2 NC_005259.1 + 64336 0.66 0.75421
Target:  5'- uGCcUCGGACUGCCACUcguugcgggcgguGCCCaucagcGAgGUCu -3'
miRNA:   3'- -CGuAGCUUGACGGUGG-------------CGGG------CUaCAG- -5'
23268 3' -55.2 NC_005259.1 + 53532 0.67 0.745012
Target:  5'- gGCA-CGGGCU--CGgUGCCCGGUGUCg -3'
miRNA:   3'- -CGUaGCUUGAcgGUgGCGGGCUACAG- -5'
23268 3' -55.2 NC_005259.1 + 53171 0.67 0.745012
Target:  5'- ---cCGAuCUcGCCACCGCCgcccgucgCGGUGUCc -3'
miRNA:   3'- cguaGCUuGA-CGGUGGCGG--------GCUACAG- -5'
23268 3' -55.2 NC_005259.1 + 33606 0.67 0.745012
Target:  5'- cGCgGUCGAGCUGCaACCGgccaCCGAaacUGUUg -3'
miRNA:   3'- -CG-UAGCUUGACGgUGGCg---GGCU---ACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.