miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23269 3' -57.7 NC_005259.1 + 1362 0.68 0.569029
Target:  5'- aCUGGGCcgcucgccGCGCCGCccgCGAGGCCc-- -3'
miRNA:   3'- -GGCCUG--------CGCGGCGuuaGCUCUGGcua -5'
23269 3' -57.7 NC_005259.1 + 4336 0.67 0.60049
Target:  5'- gCCGGACcuCGUCGCGGUgaUGAGcGCCGGa -3'
miRNA:   3'- -GGCCUGc-GCGGCGUUA--GCUC-UGGCUa -5'
23269 3' -57.7 NC_005259.1 + 6087 0.66 0.673323
Target:  5'- -aGGACGCccucaacGCCGaGAUcgcCGAGGCCGAg -3'
miRNA:   3'- ggCCUGCG-------CGGCgUUA---GCUCUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 6905 0.69 0.497575
Target:  5'- aCGcACGCGCCGCcgccAUCGAGaACCGc- -3'
miRNA:   3'- gGCcUGCGCGGCGu---UAGCUC-UGGCua -5'
23269 3' -57.7 NC_005259.1 + 7239 0.73 0.306308
Target:  5'- aCGGcagcCGCGCCGguGUCGAGugCGc- -3'
miRNA:   3'- gGCCu---GCGCGGCguUAGCUCugGCua -5'
23269 3' -57.7 NC_005259.1 + 8059 0.68 0.517627
Target:  5'- gCCGGuCGcCGCCGacAUCGAGAUCGu- -3'
miRNA:   3'- -GGCCuGC-GCGGCguUAGCUCUGGCua -5'
23269 3' -57.7 NC_005259.1 + 8950 0.72 0.336541
Target:  5'- gUGGGCGCGCCGUGGaCGGGcACCGu- -3'
miRNA:   3'- gGCCUGCGCGGCGUUaGCUC-UGGCua -5'
23269 3' -57.7 NC_005259.1 + 9170 0.66 0.673323
Target:  5'- gCCGGugGCaGCCGaugcaauGGUCGAGgucgucauacgggGCCGGa -3'
miRNA:   3'- -GGCCugCG-CGGCg------UUAGCUC-------------UGGCUa -5'
23269 3' -57.7 NC_005259.1 + 11014 0.71 0.368892
Target:  5'- gCCGGACGCGCCGaggcagGAGuucGCCGGg -3'
miRNA:   3'- -GGCCUGCGCGGCguuag-CUC---UGGCUa -5'
23269 3' -57.7 NC_005259.1 + 14176 0.66 0.694249
Target:  5'- gCCGGGCGgGUgGCAAcCGcucacccccgagcAGGCCGGg -3'
miRNA:   3'- -GGCCUGCgCGgCGUUaGC-------------UCUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 14224 0.7 0.412229
Target:  5'- cCCGGcGCGCGUCGUgcguAUCG-GGCCGGg -3'
miRNA:   3'- -GGCC-UGCGCGGCGu---UAGCuCUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 14708 0.66 0.673323
Target:  5'- gCCGcGACGaacagcaCGCCGCGcUCGucGCCGAg -3'
miRNA:   3'- -GGC-CUGC-------GCGGCGUuAGCucUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 15089 0.69 0.48768
Target:  5'- gCCGGucAUGCGCCGCAgggccAUCGAgugGACCu-- -3'
miRNA:   3'- -GGCC--UGCGCGGCGU-----UAGCU---CUGGcua -5'
23269 3' -57.7 NC_005259.1 + 15374 0.68 0.558627
Target:  5'- uCUGGGCGagcuGCCGCAAcCGuGGCCGc- -3'
miRNA:   3'- -GGCCUGCg---CGGCGUUaGCuCUGGCua -5'
23269 3' -57.7 NC_005259.1 + 16798 0.7 0.421267
Target:  5'- gCGGuCGCGUacauCGCGcUCGGGGCCGGg -3'
miRNA:   3'- gGCCuGCGCG----GCGUuAGCUCUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 17755 0.68 0.527773
Target:  5'- uCCGuGAgGcCGCCGCGcgCcGGGCCGAg -3'
miRNA:   3'- -GGC-CUgC-GCGGCGUuaGcUCUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 17792 0.71 0.403312
Target:  5'- gCGuGCGCaCCGCGAUagCGAGGCCGGUg -3'
miRNA:   3'- gGCcUGCGcGGCGUUA--GCUCUGGCUA- -5'
23269 3' -57.7 NC_005259.1 + 18158 0.66 0.673323
Target:  5'- aUCGGGCuGaCGCCggaucugGCAGUCGAGGUCGAc -3'
miRNA:   3'- -GGCCUG-C-GCGG-------CGUUAGCUCUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 18332 0.67 0.632174
Target:  5'- gCCGG-UGCGuUCGUggUCGAcGCCGAc -3'
miRNA:   3'- -GGCCuGCGC-GGCGuuAGCUcUGGCUa -5'
23269 3' -57.7 NC_005259.1 + 19662 0.66 0.660694
Target:  5'- cUCGGGCa-GCCGCuacauccccggucaGGUCGGGAUCGAg -3'
miRNA:   3'- -GGCCUGcgCGGCG--------------UUAGCUCUGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.