Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23271 | 5' | -61.9 | NC_005259.1 | + | 56259 | 0.75 | 0.104019 |
Target: 5'- cGGCG--GCCUUgagcgccGCCGCCCGGCccguaUCGGCa -3' miRNA: 3'- -UCGCacUGGAA-------CGGCGGGCCG-----AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 29933 | 0.79 | 0.059087 |
Target: 5'- cGCGUGGCCgccacGCgGCCCGGUcgCGGCu -3' miRNA: 3'- uCGCACUGGaa---CGgCGGGCCGa-GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 18706 | 0.8 | 0.046148 |
Target: 5'- cGGCGgucUGACCUcgaucaucggGCCGCCCGGCaUCGGUa -3' miRNA: 3'- -UCGC---ACUGGAa---------CGGCGGGCCG-AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 8093 | 0.71 | 0.226464 |
Target: 5'- uGGCGUGACCgUGCgauccuggcagaCcCCCGGCcuagUCGGCu -3' miRNA: 3'- -UCGCACUGGaACG------------GcGGGCCG----AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 32538 | 0.7 | 0.232127 |
Target: 5'- aGGCuUGACCUUGCUGuuggccgcCCCGGCgagcgCGGg -3' miRNA: 3'- -UCGcACUGGAACGGC--------GGGCCGa----GCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 20478 | 0.7 | 0.237909 |
Target: 5'- cGcCGUcGACCUcgacaCCGCCCGGCagcucaUCGGCg -3' miRNA: 3'- uC-GCA-CUGGAac---GGCGGGCCG------AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 60142 | 0.69 | 0.294778 |
Target: 5'- uGCGcGGCCUUgGCCGCCgccucagCGGCcucacgggCGGCg -3' miRNA: 3'- uCGCaCUGGAA-CGGCGG-------GCCGa-------GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 35183 | 0.69 | 0.288575 |
Target: 5'- uGGCGUGccggugagcagcACCgUGCCGCCUGaggCGGCg -3' miRNA: 3'- -UCGCAC------------UGGaACGGCGGGCcgaGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 41213 | 0.69 | 0.281805 |
Target: 5'- cGGUGUgGAUCgucaCGCCCuGCUCGGCg -3' miRNA: 3'- -UCGCA-CUGGaacgGCGGGcCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 8859 | 0.69 | 0.281805 |
Target: 5'- cAGCGUGcccgccGCCUgccgcacccacGCCGCCUGagcgucacGCUCGGCc -3' miRNA: 3'- -UCGCAC------UGGAa----------CGGCGGGC--------CGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 17333 | 0.69 | 0.268642 |
Target: 5'- gGGUGUG-CCggucaacGUCGCCgucgaggucggCGGCUCGGCg -3' miRNA: 3'- -UCGCACuGGaa-----CGGCGG-----------GCCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 61053 | 0.7 | 0.262249 |
Target: 5'- gGGCGgcucACCUUG-UGCCgGGCaUCGGCa -3' miRNA: 3'- -UCGCac--UGGAACgGCGGgCCG-AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 7908 | 0.7 | 0.262249 |
Target: 5'- uAGCGcaccACCUUGCCGCCCuuGGuCUCgugGGCc -3' miRNA: 3'- -UCGCac--UGGAACGGCGGG--CC-GAG---CCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 23615 | 0.7 | 0.262249 |
Target: 5'- cGCGUGGCg--GCaGCCagaCGGCUCGGUg -3' miRNA: 3'- uCGCACUGgaaCGgCGG---GCCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 51824 | 0.7 | 0.249834 |
Target: 5'- gGGCG-GGCagacCCGCCCGGUugaUCGGCc -3' miRNA: 3'- -UCGCaCUGgaacGGCGGGCCG---AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 17504 | 0.7 | 0.249834 |
Target: 5'- cGGC--GACCUUGCCGaUCCGaGCUCgugGGCa -3' miRNA: 3'- -UCGcaCUGGAACGGC-GGGC-CGAG---CCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 18964 | 0.7 | 0.249834 |
Target: 5'- uGGgGUGACCUcGCCgcguacaucGCCCGGCacgagaUCGGa -3' miRNA: 3'- -UCgCACUGGAaCGG---------CGGGCCG------AGCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 21961 | 0.7 | 0.243811 |
Target: 5'- aGGCGUGACCcgcgugggUGUCGUucuccccaCCGGCacCGGCa -3' miRNA: 3'- -UCGCACUGGa-------ACGGCG--------GGCCGa-GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 29455 | 1.11 | 0.000222 |
Target: 5'- cAGCGUGACCUUGCCGCCCGGCUCGGCa -3' miRNA: 3'- -UCGCACUGGAACGGCGGGCCGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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