Results 1 - 20 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 960 | 0.66 | 0.566287 |
Target: 5'- aGCUCGCgcaacggcucaACGGCgACGAGAcacCGGCa- -3' miRNA: 3'- -CGGGCGa----------UGCCGgUGCUCUa--GCCGcu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 1871 | 0.71 | 0.30657 |
Target: 5'- cGCCgCGUUccguaaGCaGGCCGcCGAGAUCGcGCGAg -3' miRNA: 3'- -CGG-GCGA------UG-CCGGU-GCUCUAGC-CGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 4275 | 0.66 | 0.576617 |
Target: 5'- gGgCgGCUGCGcuGCCACGAGcacggacCGGCGGc -3' miRNA: 3'- -CgGgCGAUGC--CGGUGCUCua-----GCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 4548 | 0.67 | 0.525516 |
Target: 5'- uGCCCagUGCGGgCACGAGGucacgccgaucgUCGGCa- -3' miRNA: 3'- -CGGGcgAUGCCgGUGCUCU------------AGCCGcu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 4947 | 0.7 | 0.368503 |
Target: 5'- gGCCCGaaaACGGCUACGAcGAUcCGGUa- -3' miRNA: 3'- -CGGGCga-UGCCGGUGCU-CUA-GCCGcu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 5412 | 0.66 | 0.576617 |
Target: 5'- aCCCGCgcUGGCCGCcacgucGAGGUCuGCGc -3' miRNA: 3'- cGGGCGauGCCGGUG------CUCUAGcCGCu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 5547 | 0.69 | 0.393841 |
Target: 5'- cGCCCGa---GGCCGCGugGGGUggugaCGGCGAg -3' miRNA: 3'- -CGGGCgaugCCGGUGC--UCUA-----GCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 7403 | 0.66 | 0.607825 |
Target: 5'- aCCCGCaACGGCauccucguCGccGUCGGCGGu -3' miRNA: 3'- cGGGCGaUGCCGgu------GCucUAGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 8367 | 0.74 | 0.212539 |
Target: 5'- cGCUCgGCgGCGGCCucggcaucgGCGAGAgccUCGGCGAg -3' miRNA: 3'- -CGGG-CGaUGCCGG---------UGCUCU---AGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 8604 | 0.68 | 0.485903 |
Target: 5'- gGCCUgaguuGCUucAUGGUCACcgGAGAUCcGGCGAg -3' miRNA: 3'- -CGGG-----CGA--UGCCGGUG--CUCUAG-CCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 10322 | 0.66 | 0.586988 |
Target: 5'- cGUCaucggGCU-CGGCgACGGGcUCGGCGGc -3' miRNA: 3'- -CGGg----CGAuGCCGgUGCUCuAGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 13111 | 0.73 | 0.234891 |
Target: 5'- gGCCCGCUcgGCGGCUACGAccagcgcacgguGuUCGGCu- -3' miRNA: 3'- -CGGGCGA--UGCCGGUGCU------------CuAGCCGcu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 16427 | 0.67 | 0.505543 |
Target: 5'- uGCCCGUcgaGCGGCCcaaacCGGGcaccGUCGGCa- -3' miRNA: 3'- -CGGGCGa--UGCCGGu----GCUC----UAGCCGcu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 17338 | 0.69 | 0.385271 |
Target: 5'- uGCCgGUcaACGucGCCGuCGAGGUCGGCGGc -3' miRNA: 3'- -CGGgCGa-UGC--CGGU-GCUCUAGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 19205 | 0.67 | 0.495679 |
Target: 5'- aGCUCGUggugcggGCGGCgACGuGGgacaccgagUCGGCGAu -3' miRNA: 3'- -CGGGCGa------UGCCGgUGCuCU---------AGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 19955 | 0.66 | 0.576617 |
Target: 5'- cGUCCGCaACGGCgGC----UCGGCGGu -3' miRNA: 3'- -CGGGCGaUGCCGgUGcucuAGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 20175 | 0.73 | 0.240779 |
Target: 5'- cGCCCGCcgccuCGGCUgACGAGAUCGcCGGu -3' miRNA: 3'- -CGGGCGau---GCCGG-UGCUCUAGCcGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 21413 | 0.68 | 0.438493 |
Target: 5'- cGCCCGUagACcugGGCUACuaaAGAUCGGCGu -3' miRNA: 3'- -CGGGCGa-UG---CCGGUGc--UCUAGCCGCu -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 24230 | 0.68 | 0.447766 |
Target: 5'- aCCgGCgggGCcgaGGCaCGCGAGuUCGGCGAg -3' miRNA: 3'- cGGgCGa--UG---CCG-GUGCUCuAGCCGCU- -5' |
|||||||
23272 | 3' | -59.3 | NC_005259.1 | + | 24884 | 0.67 | 0.535614 |
Target: 5'- -aCCGCUAuCGaGUCAgcCGAGGaCGGCGAg -3' miRNA: 3'- cgGGCGAU-GC-CGGU--GCUCUaGCCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home