miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23272 3' -59.3 NC_005259.1 + 960 0.66 0.566287
Target:  5'- aGCUCGCgcaacggcucaACGGCgACGAGAcacCGGCa- -3'
miRNA:   3'- -CGGGCGa----------UGCCGgUGCUCUa--GCCGcu -5'
23272 3' -59.3 NC_005259.1 + 1871 0.71 0.30657
Target:  5'- cGCCgCGUUccguaaGCaGGCCGcCGAGAUCGcGCGAg -3'
miRNA:   3'- -CGG-GCGA------UG-CCGGU-GCUCUAGC-CGCU- -5'
23272 3' -59.3 NC_005259.1 + 4275 0.66 0.576617
Target:  5'- gGgCgGCUGCGcuGCCACGAGcacggacCGGCGGc -3'
miRNA:   3'- -CgGgCGAUGC--CGGUGCUCua-----GCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 4548 0.67 0.525516
Target:  5'- uGCCCagUGCGGgCACGAGGucacgccgaucgUCGGCa- -3'
miRNA:   3'- -CGGGcgAUGCCgGUGCUCU------------AGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 4947 0.7 0.368503
Target:  5'- gGCCCGaaaACGGCUACGAcGAUcCGGUa- -3'
miRNA:   3'- -CGGGCga-UGCCGGUGCU-CUA-GCCGcu -5'
23272 3' -59.3 NC_005259.1 + 5412 0.66 0.576617
Target:  5'- aCCCGCgcUGGCCGCcacgucGAGGUCuGCGc -3'
miRNA:   3'- cGGGCGauGCCGGUG------CUCUAGcCGCu -5'
23272 3' -59.3 NC_005259.1 + 5547 0.69 0.393841
Target:  5'- cGCCCGa---GGCCGCGugGGGUggugaCGGCGAg -3'
miRNA:   3'- -CGGGCgaugCCGGUGC--UCUA-----GCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 7403 0.66 0.607825
Target:  5'- aCCCGCaACGGCauccucguCGccGUCGGCGGu -3'
miRNA:   3'- cGGGCGaUGCCGgu------GCucUAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 8367 0.74 0.212539
Target:  5'- cGCUCgGCgGCGGCCucggcaucgGCGAGAgccUCGGCGAg -3'
miRNA:   3'- -CGGG-CGaUGCCGG---------UGCUCU---AGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 8604 0.68 0.485903
Target:  5'- gGCCUgaguuGCUucAUGGUCACcgGAGAUCcGGCGAg -3'
miRNA:   3'- -CGGG-----CGA--UGCCGGUG--CUCUAG-CCGCU- -5'
23272 3' -59.3 NC_005259.1 + 10322 0.66 0.586988
Target:  5'- cGUCaucggGCU-CGGCgACGGGcUCGGCGGc -3'
miRNA:   3'- -CGGg----CGAuGCCGgUGCUCuAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 13111 0.73 0.234891
Target:  5'- gGCCCGCUcgGCGGCUACGAccagcgcacgguGuUCGGCu- -3'
miRNA:   3'- -CGGGCGA--UGCCGGUGCU------------CuAGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 16427 0.67 0.505543
Target:  5'- uGCCCGUcgaGCGGCCcaaacCGGGcaccGUCGGCa- -3'
miRNA:   3'- -CGGGCGa--UGCCGGu----GCUC----UAGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 17338 0.69 0.385271
Target:  5'- uGCCgGUcaACGucGCCGuCGAGGUCGGCGGc -3'
miRNA:   3'- -CGGgCGa-UGC--CGGU-GCUCUAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 19205 0.67 0.495679
Target:  5'- aGCUCGUggugcggGCGGCgACGuGGgacaccgagUCGGCGAu -3'
miRNA:   3'- -CGGGCGa------UGCCGgUGCuCU---------AGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 19955 0.66 0.576617
Target:  5'- cGUCCGCaACGGCgGC----UCGGCGGu -3'
miRNA:   3'- -CGGGCGaUGCCGgUGcucuAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 20175 0.73 0.240779
Target:  5'- cGCCCGCcgccuCGGCUgACGAGAUCGcCGGu -3'
miRNA:   3'- -CGGGCGau---GCCGG-UGCUCUAGCcGCU- -5'
23272 3' -59.3 NC_005259.1 + 21413 0.68 0.438493
Target:  5'- cGCCCGUagACcugGGCUACuaaAGAUCGGCGu -3'
miRNA:   3'- -CGGGCGa-UG---CCGGUGc--UCUAGCCGCu -5'
23272 3' -59.3 NC_005259.1 + 24230 0.68 0.447766
Target:  5'- aCCgGCgggGCcgaGGCaCGCGAGuUCGGCGAg -3'
miRNA:   3'- cGGgCGa--UG---CCG-GUGCUCuAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 24884 0.67 0.535614
Target:  5'- -aCCGCUAuCGaGUCAgcCGAGGaCGGCGAg -3'
miRNA:   3'- cgGGCGAU-GC-CGGU--GCUCUaGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.