miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23272 3' -59.3 NC_005259.1 + 25430 0.67 0.525516
Target:  5'- aGgUCGaggaaUGCGaGCCguAUGAGGUCGGCGAg -3'
miRNA:   3'- -CgGGCg----AUGC-CGG--UGCUCUAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 4548 0.67 0.525516
Target:  5'- uGCCCagUGCGGgCACGAGGucacgccgaucgUCGGCa- -3'
miRNA:   3'- -CGGGcgAUGCCgGUGCUCU------------AGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 33316 0.67 0.525516
Target:  5'- uCCCGCcgucgGCGGUCACGcggaaguGAUCGGgGu -3'
miRNA:   3'- cGGGCGa----UGCCGGUGCu------CUAGCCgCu -5'
23272 3' -59.3 NC_005259.1 + 58912 0.67 0.525516
Target:  5'- gGCUCGUcgGCGGUCuuGucGUCGGCGGg -3'
miRNA:   3'- -CGGGCGa-UGCCGGugCucUAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 33900 0.67 0.525516
Target:  5'- aCCCGCgcgACGGgC-CGAGAcCGGCc- -3'
miRNA:   3'- cGGGCGa--UGCCgGuGCUCUaGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 63946 0.67 0.525516
Target:  5'- -aCCGUc-CGGCaGCGAGAucUCGGCGGu -3'
miRNA:   3'- cgGGCGauGCCGgUGCUCU--AGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 52476 0.67 0.513494
Target:  5'- cGCCCGCgaauacgucgagGCGGUCAacCGAuacgaccaacaGAUCGGCa- -3'
miRNA:   3'- -CGGGCGa-----------UGCCGGU--GCU-----------CUAGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 16427 0.67 0.505543
Target:  5'- uGCCCGUcgaGCGGCCcaaacCGGGcaccGUCGGCa- -3'
miRNA:   3'- -CGGGCGa--UGCCGGu----GCUC----UAGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 46650 0.67 0.495679
Target:  5'- gGCCacacgGCUGCGGU--UGAGGuucUCGGCGAg -3'
miRNA:   3'- -CGGg----CGAUGCCGguGCUCU---AGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 62822 0.67 0.495679
Target:  5'- aGCgCCGCU-UGcCCGCGAGGUCGaGCGc -3'
miRNA:   3'- -CG-GGCGAuGCcGGUGCUCUAGC-CGCu -5'
23272 3' -59.3 NC_005259.1 + 57433 0.67 0.495679
Target:  5'- gGCUCGCuUAC-GCgGCGAGGUUGGUGc -3'
miRNA:   3'- -CGGGCG-AUGcCGgUGCUCUAGCCGCu -5'
23272 3' -59.3 NC_005259.1 + 19205 0.67 0.495679
Target:  5'- aGCUCGUggugcggGCGGCgACGuGGgacaccgagUCGGCGAu -3'
miRNA:   3'- -CGGGCGa------UGCCGgUGCuCU---------AGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 8604 0.68 0.485903
Target:  5'- gGCCUgaguuGCUucAUGGUCACcgGAGAUCcGGCGAg -3'
miRNA:   3'- -CGGG-----CGA--UGCCGGUG--CUCUAG-CCGCU- -5'
23272 3' -59.3 NC_005259.1 + 68616 0.68 0.466633
Target:  5'- -aCCGCUuguUGGCCAgcCGGGcacccUCGGCGAa -3'
miRNA:   3'- cgGGCGAu--GCCGGU--GCUCu----AGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 55703 0.68 0.457148
Target:  5'- aGCCuCGUUgAUGGCCGCGAGcaccucgcccuuGUUGGCa- -3'
miRNA:   3'- -CGG-GCGA-UGCCGGUGCUC------------UAGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 45099 0.68 0.456205
Target:  5'- uGCCCGUguaGCcggucgGGCCgagaguggugccgACGAGGUCGGCa- -3'
miRNA:   3'- -CGGGCGa--UG------CCGG-------------UGCUCUAGCCGcu -5'
23272 3' -59.3 NC_005259.1 + 24230 0.68 0.447766
Target:  5'- aCCgGCgggGCcgaGGCaCGCGAGuUCGGCGAg -3'
miRNA:   3'- cGGgCGa--UG---CCG-GUGCUCuAGCCGCU- -5'
23272 3' -59.3 NC_005259.1 + 21413 0.68 0.438493
Target:  5'- cGCCCGUagACcugGGCUACuaaAGAUCGGCGu -3'
miRNA:   3'- -CGGGCGa-UG---CCGGUGc--UCUAGCCGCu -5'
23272 3' -59.3 NC_005259.1 + 64844 0.69 0.42933
Target:  5'- cCCUGCUggcgAUGGCCACccuGAUCGGuCGGa -3'
miRNA:   3'- cGGGCGA----UGCCGGUGcu-CUAGCC-GCU- -5'
23272 3' -59.3 NC_005259.1 + 67120 0.69 0.411349
Target:  5'- uGCCCGCUGCGGUCguGCGuGAgcaccgCuGUGAg -3'
miRNA:   3'- -CGGGCGAUGCCGG--UGCuCUa-----GcCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.