miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23273 3' -58.4 NC_005259.1 + 61648 0.66 0.661347
Target:  5'- aCUCaCCGGUcagcucaacgCGCUGC-CCAUCGGCGg -3'
miRNA:   3'- -GGGcGGCCA----------GCGAUGcGGUAGCUGUg -5'
23273 3' -58.4 NC_005259.1 + 36137 0.66 0.661347
Target:  5'- gCCGCCGG--GCUGuccguCGCCAUgGcCACg -3'
miRNA:   3'- gGGCGGCCagCGAU-----GCGGUAgCuGUG- -5'
23273 3' -58.4 NC_005259.1 + 55585 0.66 0.661347
Target:  5'- aCCGCCG--CGCUG-GCCAcgCGAUACc -3'
miRNA:   3'- gGGCGGCcaGCGAUgCGGUa-GCUGUG- -5'
23273 3' -58.4 NC_005259.1 + 53263 0.66 0.661347
Target:  5'- gCCGCCGcuGUCGCcggugcCGCCAagaUCGACc- -3'
miRNA:   3'- gGGCGGC--CAGCGau----GCGGU---AGCUGug -5'
23273 3' -58.4 NC_005259.1 + 44237 0.66 0.650869
Target:  5'- gCCCGCCGcGcCGCccGCGCgcgagaaGUCGGCGa -3'
miRNA:   3'- -GGGCGGC-CaGCGa-UGCGg------UAGCUGUg -5'
23273 3' -58.4 NC_005259.1 + 37223 0.66 0.650869
Target:  5'- gCCGCCGGggCGCUGgcccgUGCCGgaUUGGCu- -3'
miRNA:   3'- gGGCGGCCa-GCGAU-----GCGGU--AGCUGug -5'
23273 3' -58.4 NC_005259.1 + 45625 0.66 0.650869
Target:  5'- gCCCGCCGGgccgggcagCGCgccggugcCGCCGUgaACACc -3'
miRNA:   3'- -GGGCGGCCa--------GCGau------GCGGUAgcUGUG- -5'
23273 3' -58.4 NC_005259.1 + 31888 0.66 0.650869
Target:  5'- cCUCGCCGGUCuCaAgGCC--CGGCGCg -3'
miRNA:   3'- -GGGCGGCCAGcGaUgCGGuaGCUGUG- -5'
23273 3' -58.4 NC_005259.1 + 24042 0.66 0.650869
Target:  5'- aCCGCC----GCaACGUCGUCGGCGCg -3'
miRNA:   3'- gGGCGGccagCGaUGCGGUAGCUGUG- -5'
23273 3' -58.4 NC_005259.1 + 1294 0.66 0.650869
Target:  5'- cCCCGa-GGUCGagcuCUACGCgGUCGugAg -3'
miRNA:   3'- -GGGCggCCAGC----GAUGCGgUAGCugUg -5'
23273 3' -58.4 NC_005259.1 + 55004 0.66 0.640376
Target:  5'- -gUGCuCGGcUCGCUugGCgGucgucUCGGCACg -3'
miRNA:   3'- ggGCG-GCC-AGCGAugCGgU-----AGCUGUG- -5'
23273 3' -58.4 NC_005259.1 + 14336 0.66 0.629875
Target:  5'- gCCCGCgugCGGgcCGCcgACGCCAUCaacuCACg -3'
miRNA:   3'- -GGGCG---GCCa-GCGa-UGCGGUAGcu--GUG- -5'
23273 3' -58.4 NC_005259.1 + 17813 0.66 0.629875
Target:  5'- --gGCCGGUgaGCUcagcgAgGCCAUCGACGg -3'
miRNA:   3'- gggCGGCCAg-CGA-----UgCGGUAGCUGUg -5'
23273 3' -58.4 NC_005259.1 + 16711 0.66 0.629875
Target:  5'- aCCGCCgagcaGGUCGCgcucUGCC-UCGcCACg -3'
miRNA:   3'- gGGCGG-----CCAGCGau--GCGGuAGCuGUG- -5'
23273 3' -58.4 NC_005259.1 + 48950 0.66 0.628825
Target:  5'- aCCGUCGGUUacaucgGCaACGCCcgcauggGUCGugACg -3'
miRNA:   3'- gGGCGGCCAG------CGaUGCGG-------UAGCugUG- -5'
23273 3' -58.4 NC_005259.1 + 43827 0.66 0.627775
Target:  5'- aCCGCCGGacacagggccgcCGCU-CGCCAUgcCGAgCGCa -3'
miRNA:   3'- gGGCGGCCa-----------GCGAuGCGGUA--GCU-GUG- -5'
23273 3' -58.4 NC_005259.1 + 9464 0.66 0.619377
Target:  5'- gUCCGCaCGGUCacgucaguGUUGuCGCgCAUCGAgGCg -3'
miRNA:   3'- -GGGCG-GCCAG--------CGAU-GCG-GUAGCUgUG- -5'
23273 3' -58.4 NC_005259.1 + 24869 0.66 0.619377
Target:  5'- gCCCGCC--UCGCUcugacCGCUAUCGAguCa -3'
miRNA:   3'- -GGGCGGccAGCGAu----GCGGUAGCUguG- -5'
23273 3' -58.4 NC_005259.1 + 65804 0.66 0.619377
Target:  5'- -nCGCUGGUcgaaaCGCUG-GCCGUCGACc- -3'
miRNA:   3'- ggGCGGCCA-----GCGAUgCGGUAGCUGug -5'
23273 3' -58.4 NC_005259.1 + 16469 0.66 0.619377
Target:  5'- cCCCGCCGcagaUCGC--CGUCAagGGCGCa -3'
miRNA:   3'- -GGGCGGCc---AGCGauGCGGUagCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.