miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23273 5' -53.8 NC_005259.1 + 66971 0.66 0.855001
Target:  5'- uGCGCGccucGCGGUgaAUCGCGUUgUACg -3'
miRNA:   3'- -UGCGCuaguUGCCG--UGGCGCAAgAUG- -5'
23273 5' -53.8 NC_005259.1 + 19100 0.66 0.854167
Target:  5'- uGCGCGAacUCAcCGGCGCUgguguguGCGUcgUGCa -3'
miRNA:   3'- -UGCGCU--AGUuGCCGUGG-------CGCAagAUG- -5'
23273 5' -53.8 NC_005259.1 + 8895 0.66 0.84655
Target:  5'- -aGCG-UCAcgcuCGGCcugcugacggGCCGCGUUCUGg -3'
miRNA:   3'- ugCGCuAGUu---GCCG----------UGGCGCAAGAUg -5'
23273 5' -53.8 NC_005259.1 + 14527 0.66 0.84655
Target:  5'- cACGCGGUgCGuuuCGGUGCCGaGUUCguccgGCa -3'
miRNA:   3'- -UGCGCUA-GUu--GCCGUGGCgCAAGa----UG- -5'
23273 5' -53.8 NC_005259.1 + 44295 0.66 0.84397
Target:  5'- aGCGCGAgcggguugcccucuUUGACGagcguguugaGCGCCGCGUagCUGCc -3'
miRNA:   3'- -UGCGCU--------------AGUUGC----------CGUGGCGCAa-GAUG- -5'
23273 5' -53.8 NC_005259.1 + 3985 0.66 0.837875
Target:  5'- cCGCGAgcacgCGAUGGCggGCCGCGUc---- -3'
miRNA:   3'- uGCGCUa----GUUGCCG--UGGCGCAagaug -5'
23273 5' -53.8 NC_005259.1 + 66039 0.66 0.828986
Target:  5'- cGCGCGAgcUCGACGuagaCGCCGcCGUgggcCUGCu -3'
miRNA:   3'- -UGCGCU--AGUUGCc---GUGGC-GCAa---GAUG- -5'
23273 5' -53.8 NC_005259.1 + 44929 0.66 0.819892
Target:  5'- cGCGCuGAUCGgguccAUGGCACCaGCGggCagUGCg -3'
miRNA:   3'- -UGCG-CUAGU-----UGCCGUGG-CGCaaG--AUG- -5'
23273 5' -53.8 NC_005259.1 + 55068 0.66 0.819892
Target:  5'- uGCGCGAgaUCAGCGGCuuucuuCUGCugaucgCUGCc -3'
miRNA:   3'- -UGCGCU--AGUUGCCGu-----GGCGcaa---GAUG- -5'
23273 5' -53.8 NC_005259.1 + 62847 0.66 0.819892
Target:  5'- cGCGCGGUUGACGaGCAgCCGC--UCgGCg -3'
miRNA:   3'- -UGCGCUAGUUGC-CGU-GGCGcaAGaUG- -5'
23273 5' -53.8 NC_005259.1 + 10982 0.66 0.816199
Target:  5'- cAUGUGAacgauuguccucgCAACGGCACCGCGccggACg -3'
miRNA:   3'- -UGCGCUa------------GUUGCCGUGGCGCaagaUG- -5'
23273 5' -53.8 NC_005259.1 + 2047 0.67 0.810602
Target:  5'- -gGCGGUCAcCGGCACCGagacacggcgGUUCa-- -3'
miRNA:   3'- ugCGCUAGUuGCCGUGGCg---------CAAGaug -5'
23273 5' -53.8 NC_005259.1 + 7226 0.67 0.781662
Target:  5'- uGCGUGAUgaaCGACGGCAgCCGCGccggugUCgagUGCg -3'
miRNA:   3'- -UGCGCUA---GUUGCCGU-GGCGCa-----AG---AUG- -5'
23273 5' -53.8 NC_005259.1 + 56652 0.67 0.771694
Target:  5'- -aGC-AUCGAgGGCACCGCGcgUC-ACg -3'
miRNA:   3'- ugCGcUAGUUgCCGUGGCGCa-AGaUG- -5'
23273 5' -53.8 NC_005259.1 + 38771 0.68 0.761583
Target:  5'- uGCGCGAUCAuguCGGCgaaACCGaaaccgCUGCc -3'
miRNA:   3'- -UGCGCUAGUu--GCCG---UGGCgcaa--GAUG- -5'
23273 5' -53.8 NC_005259.1 + 67783 0.68 0.751341
Target:  5'- cACGCGGUgAccuuguUGGCACCGCGUg---- -3'
miRNA:   3'- -UGCGCUAgUu-----GCCGUGGCGCAagaug -5'
23273 5' -53.8 NC_005259.1 + 66657 0.68 0.740978
Target:  5'- uGC-CGGUCGGCGGUGCUGCGa--UGCu -3'
miRNA:   3'- -UGcGCUAGUUGCCGUGGCGCaagAUG- -5'
23273 5' -53.8 NC_005259.1 + 49627 0.68 0.730506
Target:  5'- uCGUcAUCGGCGGCAgCCGCGUcg-GCg -3'
miRNA:   3'- uGCGcUAGUUGCCGU-GGCGCAagaUG- -5'
23273 5' -53.8 NC_005259.1 + 61752 0.68 0.719937
Target:  5'- gGCGaGAUCuguGCGGCggcaaucaccGCCGCaUUCUGCa -3'
miRNA:   3'- -UGCgCUAGu--UGCCG----------UGGCGcAAGAUG- -5'
23273 5' -53.8 NC_005259.1 + 36647 0.68 0.709282
Target:  5'- cCGCGAUCAGCGaGCcGCCGCccUCg-- -3'
miRNA:   3'- uGCGCUAGUUGC-CG-UGGCGcaAGaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.