miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23273 5' -53.8 NC_005259.1 + 28823 1.1 0.001566
Target:  5'- cACGCGAUCAACGGCACCGCGUUCUACa -3'
miRNA:   3'- -UGCGCUAGUUGCCGUGGCGCAAGAUG- -5'
23273 5' -53.8 NC_005259.1 + 48441 0.84 0.101917
Target:  5'- gGCGCGAggCAGCGGCAgCGCGUUCcACc -3'
miRNA:   3'- -UGCGCUa-GUUGCCGUgGCGCAAGaUG- -5'
23273 5' -53.8 NC_005259.1 + 52200 0.81 0.158945
Target:  5'- aACGCacGGcUCAugGGCACCGCGUUCcGCg -3'
miRNA:   3'- -UGCG--CU-AGUugCCGUGGCGCAAGaUG- -5'
23273 5' -53.8 NC_005259.1 + 60640 0.72 0.483692
Target:  5'- uGCGCGuaguUCGACGGUgauuucgggGCCaugacgcacGCGUUCUGCa -3'
miRNA:   3'- -UGCGCu---AGUUGCCG---------UGG---------CGCAAGAUG- -5'
23273 5' -53.8 NC_005259.1 + 3501 0.72 0.504216
Target:  5'- cACGCGAcCAuguGCGcCGCCGCGUUCaACg -3'
miRNA:   3'- -UGCGCUaGU---UGCcGUGGCGCAAGaUG- -5'
23273 5' -53.8 NC_005259.1 + 46276 0.72 0.525109
Target:  5'- uGCGCGAgguucugcaaCAGCGGgGCCGcCGUggCUGCg -3'
miRNA:   3'- -UGCGCUa---------GUUGCCgUGGC-GCAa-GAUG- -5'
23273 5' -53.8 NC_005259.1 + 67971 0.71 0.55703
Target:  5'- aGCGCGcgCAGCGGCguggccaccGCCGCGagcgUCgACu -3'
miRNA:   3'- -UGCGCuaGUUGCCG---------UGGCGCa---AGaUG- -5'
23273 5' -53.8 NC_005259.1 + 25205 0.71 0.567799
Target:  5'- cCGgGGUCAGCGGCuacaagcCCGCGUUUUu- -3'
miRNA:   3'- uGCgCUAGUUGCCGu------GGCGCAAGAug -5'
23273 5' -53.8 NC_005259.1 + 1528 0.71 0.589484
Target:  5'- cUGaCGAUCAcCGGCaucaucgggGCCGCGUUCgggGCg -3'
miRNA:   3'- uGC-GCUAGUuGCCG---------UGGCGCAAGa--UG- -5'
23273 5' -53.8 NC_005259.1 + 20643 0.7 0.622255
Target:  5'- uCGCGAcacguUCGGCGGCACCGgGgcCgaggACg -3'
miRNA:   3'- uGCGCU-----AGUUGCCGUGGCgCaaGa---UG- -5'
23273 5' -53.8 NC_005259.1 + 59136 0.7 0.64416
Target:  5'- aGCGuCGAgcucggCAGCGGUGCCGgGgagCUGCu -3'
miRNA:   3'- -UGC-GCUa-----GUUGCCGUGGCgCaa-GAUG- -5'
23273 5' -53.8 NC_005259.1 + 3120 0.68 0.708212
Target:  5'- uGCGCGG-CAccgugggcagcggACGGCACCGCccGUgggaCUACa -3'
miRNA:   3'- -UGCGCUaGU-------------UGCCGUGGCG--CAa---GAUG- -5'
23273 5' -53.8 NC_005259.1 + 8673 0.68 0.709282
Target:  5'- cACGCGggCAACGGgGCCGCc-UCg-- -3'
miRNA:   3'- -UGCGCuaGUUGCCgUGGCGcaAGaug -5'
23273 5' -53.8 NC_005259.1 + 36647 0.68 0.709282
Target:  5'- cCGCGAUCAGCGaGCcGCCGCccUCg-- -3'
miRNA:   3'- uGCGCUAGUUGC-CG-UGGCGcaAGaug -5'
23273 5' -53.8 NC_005259.1 + 61752 0.68 0.719937
Target:  5'- gGCGaGAUCuguGCGGCggcaaucaccGCCGCaUUCUGCa -3'
miRNA:   3'- -UGCgCUAGu--UGCCG----------UGGCGcAAGAUG- -5'
23273 5' -53.8 NC_005259.1 + 49627 0.68 0.730506
Target:  5'- uCGUcAUCGGCGGCAgCCGCGUcg-GCg -3'
miRNA:   3'- uGCGcUAGUUGCCGU-GGCGCAagaUG- -5'
23273 5' -53.8 NC_005259.1 + 66657 0.68 0.740978
Target:  5'- uGC-CGGUCGGCGGUGCUGCGa--UGCu -3'
miRNA:   3'- -UGcGCUAGUUGCCGUGGCGCaagAUG- -5'
23273 5' -53.8 NC_005259.1 + 67783 0.68 0.751341
Target:  5'- cACGCGGUgAccuuguUGGCACCGCGUg---- -3'
miRNA:   3'- -UGCGCUAgUu-----GCCGUGGCGCAagaug -5'
23273 5' -53.8 NC_005259.1 + 38771 0.68 0.761583
Target:  5'- uGCGCGAUCAuguCGGCgaaACCGaaaccgCUGCc -3'
miRNA:   3'- -UGCGCUAGUu--GCCG---UGGCgcaa--GAUG- -5'
23273 5' -53.8 NC_005259.1 + 56652 0.67 0.771694
Target:  5'- -aGC-AUCGAgGGCACCGCGcgUC-ACg -3'
miRNA:   3'- ugCGcUAGUUgCCGUGGCGCa-AGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.