miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 5' -52.6 NC_005259.1 + 48056 0.66 0.90134
Target:  5'- ----gCCACGGCGGguagcgCCGCCGCGc- -3'
miRNA:   3'- cuuugGGUGUUGCUaa----GGCGGUGCca -5'
23274 5' -52.6 NC_005259.1 + 42294 0.66 0.90134
Target:  5'- -uGACCCACAcgcccGCGAacUCUGCCGacuCGGg -3'
miRNA:   3'- cuUUGGGUGU-----UGCUa-AGGCGGU---GCCa -5'
23274 5' -52.6 NC_005259.1 + 24038 0.66 0.879548
Target:  5'- uGGAACcgCCGCAACGucgUCGgCGCGGUg -3'
miRNA:   3'- -CUUUG--GGUGUUGCuaaGGCgGUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 59586 0.67 0.863728
Target:  5'- ----gCCGCuGACGuUUCCGCuCACGGUc -3'
miRNA:   3'- cuuugGGUG-UUGCuAAGGCG-GUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 23037 0.67 0.85545
Target:  5'- cGAACCCgACGACGAg-CUGCC-CGGc -3'
miRNA:   3'- cUUUGGG-UGUUGCUaaGGCGGuGCCa -5'
23274 5' -52.6 NC_005259.1 + 37661 0.67 0.846936
Target:  5'- ----gCCGCcgcCGGUgCCGCCACGGUu -3'
miRNA:   3'- cuuugGGUGuu-GCUAaGGCGGUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 28001 0.67 0.846936
Target:  5'- cGGGugCCGgGGCGGggUCGCCGgGGUu -3'
miRNA:   3'- -CUUugGGUgUUGCUaaGGCGGUgCCA- -5'
23274 5' -52.6 NC_005259.1 + 34309 0.67 0.838195
Target:  5'- -cGACCCACGACcag-CgGUCACGGa -3'
miRNA:   3'- cuUUGGGUGUUGcuaaGgCGGUGCCa -5'
23274 5' -52.6 NC_005259.1 + 33893 0.68 0.810699
Target:  5'- gGGAACCacccgCGCGACGGgccgagaCCgGCCACGGUg -3'
miRNA:   3'- -CUUUGG-----GUGUUGCUaa-----GG-CGGUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 3923 0.68 0.791408
Target:  5'- uGAACCC-CGGCGAgaCCGUguCGGUc -3'
miRNA:   3'- cUUUGGGuGUUGCUaaGGCGguGCCA- -5'
23274 5' -52.6 NC_005259.1 + 47931 0.68 0.791408
Target:  5'- cGAGGCCCuggaagccgaugACGGCGGUgccgauggCCGCCGCGc- -3'
miRNA:   3'- -CUUUGGG------------UGUUGCUAa-------GGCGGUGCca -5'
23274 5' -52.6 NC_005259.1 + 6897 0.68 0.781506
Target:  5'- --cGCCCGCAACGcacgcgCCGCCGCc-- -3'
miRNA:   3'- cuuUGGGUGUUGCuaa---GGCGGUGcca -5'
23274 5' -52.6 NC_005259.1 + 16638 0.69 0.770434
Target:  5'- --cACCUACGGCGAcgCCGCCGacaauuuCGGg -3'
miRNA:   3'- cuuUGGGUGUUGCUaaGGCGGU-------GCCa -5'
23274 5' -52.6 NC_005259.1 + 68754 0.69 0.761245
Target:  5'- -cGACCC-CGGCGAccUCGCCAuCGGUg -3'
miRNA:   3'- cuUUGGGuGUUGCUaaGGCGGU-GCCA- -5'
23274 5' -52.6 NC_005259.1 + 20040 0.69 0.750908
Target:  5'- aAGACCguCAagcgcuGCGAUgUCCGCUGCGGUg -3'
miRNA:   3'- cUUUGGguGU------UGCUA-AGGCGGUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 51727 0.69 0.750908
Target:  5'- aAGGCCCAC-AUGAUggccaCCGCCACGc- -3'
miRNA:   3'- cUUUGGGUGuUGCUAa----GGCGGUGCca -5'
23274 5' -52.6 NC_005259.1 + 58295 0.69 0.729882
Target:  5'- cGAGGCCaGCG--GAUaCCGCCACGGUu -3'
miRNA:   3'- -CUUUGGgUGUugCUAaGGCGGUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 29035 0.69 0.729882
Target:  5'- cGAACCCugaccaACGACGAgagCCGCgagCGCGGUa -3'
miRNA:   3'- cUUUGGG------UGUUGCUaa-GGCG---GUGCCA- -5'
23274 5' -52.6 NC_005259.1 + 13333 0.71 0.653786
Target:  5'- -uAACCCACGGCGGgaccgccCCGCCGCa-- -3'
miRNA:   3'- cuUUGGGUGUUGCUaa-----GGCGGUGcca -5'
23274 5' -52.6 NC_005259.1 + 55511 0.71 0.639434
Target:  5'- cGAGGCCCACAGCGAacugugcccacagcgCCGCCucguUGGc -3'
miRNA:   3'- -CUUUGGGUGUUGCUaa-------------GGCGGu---GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.