miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23275 3' -57.6 NC_005259.1 + 28276 1.1 0.000761
Target:  5'- cCGUCGGCUCUGCCGAUGUAGGCCACGg -3'
miRNA:   3'- -GCAGCCGAGACGGCUACAUCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 60762 0.68 0.512696
Target:  5'- aGUCGGCUCgGCgaGGU-UGGGCUGCGc -3'
miRNA:   3'- gCAGCCGAGaCGg-CUAcAUCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 47951 0.68 0.553794
Target:  5'- --aCGGCggUGCCGAUGgccGCCGCGc -3'
miRNA:   3'- gcaGCCGagACGGCUACaucCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 57021 0.68 0.564229
Target:  5'- gCG-CGGCUCgGCgCGGUG-GGGUCGCa -3'
miRNA:   3'- -GCaGCCGAGaCG-GCUACaUCCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 55807 0.67 0.585247
Target:  5'- cCGaCGGCUCacccUCGggGUAGGCCGCc -3'
miRNA:   3'- -GCaGCCGAGac--GGCuaCAUCCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 2166 0.67 0.60641
Target:  5'- gCGUCGaGCcgccggUUGCCGAgGUcauGGGCCGCu -3'
miRNA:   3'- -GCAGC-CGa-----GACGGCUaCA---UCCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 19838 0.67 0.617027
Target:  5'- uCG-CGGCUgCUGCCGcgcucgGUGUGGcGCuCGCGc -3'
miRNA:   3'- -GCaGCCGA-GACGGC------UACAUC-CG-GUGC- -5'
23275 3' -57.6 NC_005259.1 + 61923 0.66 0.648916
Target:  5'- uCGUCGGCagcucggucUCUcgcGCgGGUGccgGGGCCACc -3'
miRNA:   3'- -GCAGCCG---------AGA---CGgCUACa--UCCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 38781 0.66 0.676457
Target:  5'- uGUCGGCgaaaccgaaaccgCUGCCGAUG-AGaucgcCCGCGc -3'
miRNA:   3'- gCAGCCGa------------GACGGCUACaUCc----GGUGC- -5'
23275 3' -57.6 NC_005259.1 + 48482 0.69 0.502613
Target:  5'- gCGUCGGC-CUGUuccuCGAcgcgcuUGaGGGCCGCGa -3'
miRNA:   3'- -GCAGCCGaGACG----GCU------ACaUCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 58200 0.69 0.492617
Target:  5'- cCGUgGGCU-UGCCGGUGUcaGGGUCAg- -3'
miRNA:   3'- -GCAgCCGAgACGGCUACA--UCCGGUgc -5'
23275 3' -57.6 NC_005259.1 + 11412 0.76 0.186847
Target:  5'- -uUCGGCUCgugGCCGGUGcaacggggaugcuUGGGCCGCu -3'
miRNA:   3'- gcAGCCGAGa--CGGCUAC-------------AUCCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 40446 0.74 0.244348
Target:  5'- uGUgUGGC-CUGCCGGUGUgguugacguacugccGGGCCGCGc -3'
miRNA:   3'- gCA-GCCGaGACGGCUACA---------------UCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 45138 0.73 0.294609
Target:  5'- gGUCGGCaaUCUGCUGAUcgcucAGGCCGCc -3'
miRNA:   3'- gCAGCCG--AGACGGCUAca---UCCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 21274 0.72 0.34771
Target:  5'- uCGUCGGC-CUgacgagcagGCCGAUG-AGGCCgaACGg -3'
miRNA:   3'- -GCAGCCGaGA---------CGGCUACaUCCGG--UGC- -5'
23275 3' -57.6 NC_005259.1 + 8901 0.71 0.38099
Target:  5'- aCGcUCGGC-CUGCUGAc--GGGCCGCGu -3'
miRNA:   3'- -GC-AGCCGaGACGGCUacaUCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 27823 0.7 0.407308
Target:  5'- --cUGGCucgacuUCUGCgCGAgGUAGGCCGCGa -3'
miRNA:   3'- gcaGCCG------AGACG-GCUaCAUCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 9728 0.7 0.434736
Target:  5'- gGUCGaGCUC-GCCGAUGUuccGGUCAUc -3'
miRNA:   3'- gCAGC-CGAGaCGGCUACAu--CCGGUGc -5'
23275 3' -57.6 NC_005259.1 + 14656 0.69 0.492617
Target:  5'- gCGUgGGCUCaGcCCGAcucGGGCCGCGu -3'
miRNA:   3'- -GCAgCCGAGaC-GGCUacaUCCGGUGC- -5'
23275 3' -57.6 NC_005259.1 + 13405 0.66 0.680674
Target:  5'- uCGcUCGGCcuUCcugGCCGggGUcgccgccgGGGCCGCGc -3'
miRNA:   3'- -GC-AGCCG--AGa--CGGCuaCA--------UCCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.