miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23276 5' -60.8 NC_005259.1 + 27462 0.66 0.530982
Target:  5'- cGCGCGGGaaauugGGGCCGgGGucGGUguggccaccgccccaCGCGCc -3'
miRNA:   3'- -CGCGCUCca----UCCGGCgCU--CCA---------------GCGCG- -5'
23276 5' -60.8 NC_005259.1 + 25502 0.66 0.526994
Target:  5'- cGCGUGAGGgcaaaaAGGCCcucgacCGuGGcaUCGCGUg -3'
miRNA:   3'- -CGCGCUCCa-----UCCGGc-----GCuCC--AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 21922 0.66 0.526994
Target:  5'- aGCGCGAGGcagucgAGGCCauCGAGucucacUgGCGCa -3'
miRNA:   3'- -CGCGCUCCa-----UCCGGc-GCUCc-----AgCGCG- -5'
23276 5' -60.8 NC_005259.1 + 18842 0.66 0.526994
Target:  5'- -gGUGAGGgucucgccGGuGCCGUGcaacGGUUGCGCg -3'
miRNA:   3'- cgCGCUCCa-------UC-CGGCGCu---CCAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 25426 0.66 0.526994
Target:  5'- -gGCGAGGUcgAGgaaugcgaGCCGUauGAGGUCG-GCg -3'
miRNA:   3'- cgCGCUCCA--UC--------CGGCG--CUCCAGCgCG- -5'
23276 5' -60.8 NC_005259.1 + 39603 0.66 0.517073
Target:  5'- cGUGUG-GGUGGuGCCaucaGCGAcGGUguaCGCGCu -3'
miRNA:   3'- -CGCGCuCCAUC-CGG----CGCU-CCA---GCGCG- -5'
23276 5' -60.8 NC_005259.1 + 51427 0.66 0.506247
Target:  5'- --uUGAGGUcuugggcGGGCCaCGGGGccUCGCGCc -3'
miRNA:   3'- cgcGCUCCA-------UCCGGcGCUCC--AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 32569 0.67 0.467753
Target:  5'- aGCGCGGGGauagcguUGGGCaGCGGuuuaCGCGCg -3'
miRNA:   3'- -CGCGCUCC-------AUCCGgCGCUcca-GCGCG- -5'
23276 5' -60.8 NC_005259.1 + 32352 0.67 0.459298
Target:  5'- aCGCGAGGUugaugaccGCCGUGuAGGgCGgGCa -3'
miRNA:   3'- cGCGCUCCAuc------CGGCGC-UCCaGCgCG- -5'
23276 5' -60.8 NC_005259.1 + 36382 0.67 0.450001
Target:  5'- aGCgGCGAGGUuGGCCagcGCGAGcGacuugaGCGCc -3'
miRNA:   3'- -CG-CGCUCCAuCCGG---CGCUC-Cag----CGCG- -5'
23276 5' -60.8 NC_005259.1 + 14846 0.67 0.450001
Target:  5'- uCGUGGacacGGUcGuGCuCGCGAGGuUCGCGCu -3'
miRNA:   3'- cGCGCU----CCAuC-CG-GCGCUCC-AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 56698 0.67 0.450001
Target:  5'- gGCuGCGAGGU-GGCCaCGAuGGUguccccgaGCGCg -3'
miRNA:   3'- -CG-CGCUCCAuCCGGcGCU-CCAg-------CGCG- -5'
23276 5' -60.8 NC_005259.1 + 1873 0.67 0.440808
Target:  5'- cCGCGuuccGUaagcAGGCCGcCGAGaUCGCGCg -3'
miRNA:   3'- cGCGCuc--CA----UCCGGC-GCUCcAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 35657 0.67 0.440808
Target:  5'- -gGCGAGGguGGCCagcGCGGuGGUgGUGCa -3'
miRNA:   3'- cgCGCUCCauCCGG---CGCU-CCAgCGCG- -5'
23276 5' -60.8 NC_005259.1 + 62755 0.67 0.431723
Target:  5'- aCGCGGuGGUacucguGGGCCG-GAacGUCGCGCa -3'
miRNA:   3'- cGCGCU-CCA------UCCGGCgCUc-CAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 43177 0.68 0.422748
Target:  5'- aGCGCGAagucGGUAccgaccucGGCgGCGAuGUCGaCGCc -3'
miRNA:   3'- -CGCGCU----CCAU--------CCGgCGCUcCAGC-GCG- -5'
23276 5' -60.8 NC_005259.1 + 5557 0.68 0.40514
Target:  5'- cGCGUGGGGUGGuGaCgGCGAGacCGUGCc -3'
miRNA:   3'- -CGCGCUCCAUC-C-GgCGCUCcaGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 16516 0.68 0.388001
Target:  5'- -aGCGAGGc--GCUGCGAGcGUCGCu- -3'
miRNA:   3'- cgCGCUCCaucCGGCGCUC-CAGCGcg -5'
23276 5' -60.8 NC_005259.1 + 24233 0.68 0.388001
Target:  5'- -gGCGGGGccgAGGCaCGCGAGuUCG-GCg -3'
miRNA:   3'- cgCGCUCCa--UCCG-GCGCUCcAGCgCG- -5'
23276 5' -60.8 NC_005259.1 + 16699 0.68 0.388001
Target:  5'- gGCacCGAGGUGaccGCCGagcAGGUCGCGCu -3'
miRNA:   3'- -CGc-GCUCCAUc--CGGCgc-UCCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.