miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23276 5' -60.8 NC_005259.1 + 1873 0.67 0.440808
Target:  5'- cCGCGuuccGUaagcAGGCCGcCGAGaUCGCGCg -3'
miRNA:   3'- cGCGCuc--CA----UCCGGC-GCUCcAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 2182 0.69 0.347291
Target:  5'- uGC-CGAGGUcauGGGCCGCuacggcaAGGUgcUGCGCa -3'
miRNA:   3'- -CGcGCUCCA---UCCGGCGc------UCCA--GCGCG- -5'
23276 5' -60.8 NC_005259.1 + 3993 0.69 0.355184
Target:  5'- aCGCGAuGGcGGGCCGCGucccccGGUUGaGCa -3'
miRNA:   3'- cGCGCU-CCaUCCGGCGCu-----CCAGCgCG- -5'
23276 5' -60.8 NC_005259.1 + 5557 0.68 0.40514
Target:  5'- cGCGUGGGGUGGuGaCgGCGAGacCGUGCc -3'
miRNA:   3'- -CGCGCUCCAUC-C-GgCGCUCcaGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 8674 0.73 0.207387
Target:  5'- aCGCGGGcaacgGGGCCGCcucgaugucgcugucGAGGUCGuCGCg -3'
miRNA:   3'- cGCGCUCca---UCCGGCG---------------CUCCAGC-GCG- -5'
23276 5' -60.8 NC_005259.1 + 8776 0.7 0.295593
Target:  5'- aGCGCGGcGGUGaugagcucGGCCcgcuugGCGAGGaucuucUCGCGCc -3'
miRNA:   3'- -CGCGCU-CCAU--------CCGG------CGCUCC------AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 10774 0.77 0.095913
Target:  5'- gGCGggucauCGAGGUGGGCCGCGAGcGcaaugucguaguccUUGCGCa -3'
miRNA:   3'- -CGC------GCUCCAUCCGGCGCUC-C--------------AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 13420 0.7 0.302597
Target:  5'- gGC-CGGGGUc-GCCGcCGGGGcCGCGCu -3'
miRNA:   3'- -CGcGCUCCAucCGGC-GCUCCaGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 14846 0.67 0.450001
Target:  5'- uCGUGGacacGGUcGuGCuCGCGAGGuUCGCGCu -3'
miRNA:   3'- cGCGCU----CCAuC-CG-GCGCUCC-AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 16516 0.68 0.388001
Target:  5'- -aGCGAGGc--GCUGCGAGcGUCGCu- -3'
miRNA:   3'- cgCGCUCCaucCGGCGCUC-CAGCGcg -5'
23276 5' -60.8 NC_005259.1 + 16699 0.68 0.388001
Target:  5'- gGCacCGAGGUGaccGCCGagcAGGUCGCGCu -3'
miRNA:   3'- -CGc-GCUCCAUc--CGGCgc-UCCAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 18842 0.66 0.526994
Target:  5'- -gGUGAGGgucucgccGGuGCCGUGcaacGGUUGCGCg -3'
miRNA:   3'- cgCGCUCCa-------UC-CGGCGCu---CCAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 21922 0.66 0.526994
Target:  5'- aGCGCGAGGcagucgAGGCCauCGAGucucacUgGCGCa -3'
miRNA:   3'- -CGCGCUCCa-----UCCGGc-GCUCc-----AgCGCG- -5'
23276 5' -60.8 NC_005259.1 + 23288 0.71 0.281966
Target:  5'- gGCGCGGuGGuUGGGUauCGGGGUCcgGCGCg -3'
miRNA:   3'- -CGCGCU-CC-AUCCGgcGCUCCAG--CGCG- -5'
23276 5' -60.8 NC_005259.1 + 24233 0.68 0.388001
Target:  5'- -gGCGGGGccgAGGCaCGCGAGuUCG-GCg -3'
miRNA:   3'- cgCGCUCCa--UCCG-GCGCUCcAGCgCG- -5'
23276 5' -60.8 NC_005259.1 + 25426 0.66 0.526994
Target:  5'- -gGCGAGGUcgAGgaaugcgaGCCGUauGAGGUCG-GCg -3'
miRNA:   3'- cgCGCUCCA--UC--------CGGCG--CUCCAGCgCG- -5'
23276 5' -60.8 NC_005259.1 + 25502 0.66 0.526994
Target:  5'- cGCGUGAGGgcaaaaAGGCCcucgacCGuGGcaUCGCGUg -3'
miRNA:   3'- -CGCGCUCCa-----UCCGGc-----GCuCC--AGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 27462 0.66 0.530982
Target:  5'- cGCGCGGGaaauugGGGCCGgGGucGGUguggccaccgccccaCGCGCc -3'
miRNA:   3'- -CGCGCUCca----UCCGGCgCU--CCA---------------GCGCG- -5'
23276 5' -60.8 NC_005259.1 + 27836 1.13 0.000241
Target:  5'- uGCGCGAGGUAGGCCGCGAGGUCGCGCg -3'
miRNA:   3'- -CGCGCUCCAUCCGGCGCUCCAGCGCG- -5'
23276 5' -60.8 NC_005259.1 + 28003 0.78 0.084557
Target:  5'- gGUGcCGGGGcgGGGUCGcCGGGGUUGCGCg -3'
miRNA:   3'- -CGC-GCUCCa-UCCGGC-GCUCCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.