miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23277 3' -54.5 NC_005259.1 + 27158 0.68 0.741752
Target:  5'- -uUGGGGCCaacgAUGCCGUCggcgaUGAGCa -3'
miRNA:   3'- gcAUCCUGGcua-UGCGGCGGa----ACUCG- -5'
23277 3' -54.5 NC_005259.1 + 45016 0.68 0.731422
Target:  5'- --cGGGGCC---GCGCCGCCcugcuucaUGAGCu -3'
miRNA:   3'- gcaUCCUGGcuaUGCGGCGGa-------ACUCG- -5'
23277 3' -54.5 NC_005259.1 + 42892 0.68 0.730384
Target:  5'- gGUGGGGuuGAgcacgaGCUcagaucguuggugGCCUUGAGCa -3'
miRNA:   3'- gCAUCCUggCUaug---CGG-------------CGGAACUCG- -5'
23277 3' -54.5 NC_005259.1 + 44628 0.68 0.725178
Target:  5'- cCGUAGGuugcgccuugACCGGUGcCGCCGCCcgacUcgaacgccacaccguUGGGCa -3'
miRNA:   3'- -GCAUCC----------UGGCUAU-GCGGCGG----A---------------ACUCG- -5'
23277 3' -54.5 NC_005259.1 + 4274 0.68 0.710486
Target:  5'- ---cGGGCgGcUGCGCUGCCacGAGCa -3'
miRNA:   3'- gcauCCUGgCuAUGCGGCGGaaCUCG- -5'
23277 3' -54.5 NC_005259.1 + 26124 0.69 0.678552
Target:  5'- cCGccGGucGCCGGUccgACGCCGCCgaggccGAGCa -3'
miRNA:   3'- -GCauCC--UGGCUA---UGCGGCGGaa----CUCG- -5'
23277 3' -54.5 NC_005259.1 + 28318 0.69 0.667808
Target:  5'- gCGUA-GAUCGGUGUGCCGuCCUUG-GCg -3'
miRNA:   3'- -GCAUcCUGGCUAUGCGGC-GGAACuCG- -5'
23277 3' -54.5 NC_005259.1 + 43984 0.69 0.657032
Target:  5'- gGgcGGuGCCGAUggACGCUGaaacacuguCCUUGAGCg -3'
miRNA:   3'- gCauCC-UGGCUA--UGCGGC---------GGAACUCG- -5'
23277 3' -54.5 NC_005259.1 + 45317 0.7 0.624608
Target:  5'- cCG-AGGccgccGCCGAacugcguggccUGCGCCGCCU-GGGCc -3'
miRNA:   3'- -GCaUCC-----UGGCU-----------AUGCGGCGGAaCUCG- -5'
23277 3' -54.5 NC_005259.1 + 270 0.7 0.624608
Target:  5'- -cUAGGGCgGuGUACGCCGCCUacgcGGCc -3'
miRNA:   3'- gcAUCCUGgC-UAUGCGGCGGAac--UCG- -5'
23277 3' -54.5 NC_005259.1 + 48052 0.7 0.613801
Target:  5'- gGUGGccacGGCgGGUaGCGCCGCCgcgcccUGAGCg -3'
miRNA:   3'- gCAUC----CUGgCUA-UGCGGCGGa-----ACUCG- -5'
23277 3' -54.5 NC_005259.1 + 56249 0.7 0.613801
Target:  5'- aCGuUGGGAUCG----GCgGCCUUGAGCg -3'
miRNA:   3'- -GC-AUCCUGGCuaugCGgCGGAACUCG- -5'
23277 3' -54.5 NC_005259.1 + 19225 0.7 0.581506
Target:  5'- aCGUGGGAcaCCGAgucgGCgaugaucgaugGCCGCCUgccGGGCc -3'
miRNA:   3'- -GCAUCCU--GGCUa---UG-----------CGGCGGAa--CUCG- -5'
23277 3' -54.5 NC_005259.1 + 39994 0.72 0.497692
Target:  5'- ---cGGGCUGAU-CGCCGCC--GAGCa -3'
miRNA:   3'- gcauCCUGGCUAuGCGGCGGaaCUCG- -5'
23277 3' -54.5 NC_005259.1 + 10671 0.72 0.477551
Target:  5'- --gAGGAUgGucUGCGCCGCCUcuuugucgccguUGAGCa -3'
miRNA:   3'- gcaUCCUGgCu-AUGCGGCGGA------------ACUCG- -5'
23277 3' -54.5 NC_005259.1 + 51235 0.74 0.401406
Target:  5'- uCGUAGGcCCGGUACGUcaCGCCgUUGcGGCu -3'
miRNA:   3'- -GCAUCCuGGCUAUGCG--GCGG-AAC-UCG- -5'
23277 3' -54.5 NC_005259.1 + 62767 0.74 0.401406
Target:  5'- uCGUGGG-CCGGaACGUCGCgcagcuugguCUUGAGCg -3'
miRNA:   3'- -GCAUCCuGGCUaUGCGGCG----------GAACUCG- -5'
23277 3' -54.5 NC_005259.1 + 44978 0.74 0.392441
Target:  5'- cCG-AGGGCCGGUGCGaCUGCCga-GGCa -3'
miRNA:   3'- -GCaUCCUGGCUAUGC-GGCGGaacUCG- -5'
23277 3' -54.5 NC_005259.1 + 41884 0.74 0.383607
Target:  5'- uGgcGGGCCGAUACGCaUGCgggaUGAGCg -3'
miRNA:   3'- gCauCCUGGCUAUGCG-GCGga--ACUCG- -5'
23277 3' -54.5 NC_005259.1 + 27263 1.11 0.001275
Target:  5'- gCGUAGGACCGAUACGCCGCCUUGAGCc -3'
miRNA:   3'- -GCAUCCUGGCUAUGCGGCGGAACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.