miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23277 5' -55.2 NC_005259.1 + 66644 0.66 0.81346
Target:  5'- cCGCuCGGAUugcugcCGGUCGGCggUGcUGCg -3'
miRNA:   3'- cGCG-GCCUGu-----GCCAGUCGuaGCaACG- -5'
23277 5' -55.2 NC_005259.1 + 45627 0.69 0.61847
Target:  5'- cCGCCGGGC-CGGgCAGCG-CGccggUGCc -3'
miRNA:   3'- cGCGGCCUGuGCCaGUCGUaGCa---ACG- -5'
23277 5' -55.2 NC_005259.1 + 26406 0.69 0.639973
Target:  5'- aCGCCGGGCGCGG-CGGUGcCGccGUa -3'
miRNA:   3'- cGCGGCCUGUGCCaGUCGUaGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 60531 0.69 0.650718
Target:  5'- -gGCCGGGC-CGGgacgCAGCcgcUCGUcgGCa -3'
miRNA:   3'- cgCGGCCUGuGCCa---GUCGu--AGCAa-CG- -5'
23277 5' -55.2 NC_005259.1 + 23307 0.68 0.661448
Target:  5'- gGgGuCCGG-CGCGGUCGGUGUCGccgaGCc -3'
miRNA:   3'- -CgC-GGCCuGUGCCAGUCGUAGCaa--CG- -5'
23277 5' -55.2 NC_005259.1 + 17336 0.68 0.667874
Target:  5'- uGUGCCGGuCAacgucgccgucgaGGUCGGCGgcUCGgcGCu -3'
miRNA:   3'- -CGCGGCCuGUg------------CCAGUCGU--AGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 5260 0.68 0.69344
Target:  5'- -gGCgGGGacUACGGUCAGUgucccGUCGUUGa -3'
miRNA:   3'- cgCGgCCU--GUGCCAGUCG-----UAGCAACg -5'
23277 5' -55.2 NC_005259.1 + 26832 0.67 0.714503
Target:  5'- gGUGCCGGG-GCGGUCuGC-UCGg-GCa -3'
miRNA:   3'- -CGCGGCCUgUGCCAGuCGuAGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 27373 0.67 0.714503
Target:  5'- gGUGCCcGGCACGGUgaccggcggCGGUGUCGgcaGCg -3'
miRNA:   3'- -CGCGGcCUGUGCCA---------GUCGUAGCaa-CG- -5'
23277 5' -55.2 NC_005259.1 + 49585 0.7 0.575669
Target:  5'- cCGgCGGGCGgGGUCAGCAccUCGaccucggGCa -3'
miRNA:   3'- cGCgGCCUGUgCCAGUCGU--AGCaa-----CG- -5'
23277 5' -55.2 NC_005259.1 + 28003 0.7 0.575669
Target:  5'- gGUGCCgGGGCGgGGUCGcCGggGUUGCg -3'
miRNA:   3'- -CGCGG-CCUGUgCCAGUcGUagCAACG- -5'
23277 5' -55.2 NC_005259.1 + 26615 0.7 0.554502
Target:  5'- cGCGCCGGAC-CGG-UAGCcgauAUCGaugGCc -3'
miRNA:   3'- -CGCGGCCUGuGCCaGUCG----UAGCaa-CG- -5'
23277 5' -55.2 NC_005259.1 + 61066 0.76 0.258658
Target:  5'- uGUGCCGGGCAuCGGcauaGGCGUCGUcgGCc -3'
miRNA:   3'- -CGCGGCCUGU-GCCag--UCGUAGCAa-CG- -5'
23277 5' -55.2 NC_005259.1 + 58933 0.74 0.330287
Target:  5'- uCGgCGGGCGCGGUggCAGCGUCGgccuugGCc -3'
miRNA:   3'- cGCgGCCUGUGCCA--GUCGUAGCaa----CG- -5'
23277 5' -55.2 NC_005259.1 + 8819 0.74 0.330287
Target:  5'- cGCGCCGGGC-CGGUgAGUugacgCGcUGCg -3'
miRNA:   3'- -CGCGGCCUGuGCCAgUCGua---GCaACG- -5'
23277 5' -55.2 NC_005259.1 + 32922 0.73 0.415512
Target:  5'- cCGCuCGGGCGCGG-CGGUAUCGUc-- -3'
miRNA:   3'- cGCG-GCCUGUGCCaGUCGUAGCAacg -5'
23277 5' -55.2 NC_005259.1 + 11011 0.72 0.462878
Target:  5'- cGCGCCGGACGCGccgaGGCAggaGUUcGCc -3'
miRNA:   3'- -CGCGGCCUGUGCcag-UCGUag-CAA-CG- -5'
23277 5' -55.2 NC_005259.1 + 16436 0.71 0.501714
Target:  5'- aGCGgcccaaaCCGGGCACcGUCGGCAUCGg--- -3'
miRNA:   3'- -CGC-------GGCCUGUGcCAGUCGUAGCaacg -5'
23277 5' -55.2 NC_005259.1 + 65100 0.71 0.533571
Target:  5'- -gGCuCGuGGCACGGUCAGUgcgucaccGUCGgcGCa -3'
miRNA:   3'- cgCG-GC-CUGUGCCAGUCG--------UAGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 53948 0.7 0.541911
Target:  5'- aGCGuuucccacCCGGugaACAUGGUCAGCAggccgguauugaCGUUGCa -3'
miRNA:   3'- -CGC--------GGCC---UGUGCCAGUCGUa-----------GCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.