Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 39420 | 0.67 | 0.724923 |
Target: 5'- gGUGCCGGACACcGUCAaugaGUCGa-GCg -3' miRNA: 3'- -CGCGGCCUGUGcCAGUcg--UAGCaaCG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 40047 | 0.67 | 0.755612 |
Target: 5'- uCGCCGGugAUcgGGUCGGUcgCGaUGa -3' miRNA: 3'- cGCGGCCugUG--CCAGUCGuaGCaACg -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 41570 | 0.66 | 0.779398 |
Target: 5'- cCGCCGGAagUauccguugagcgugaGCGGUCGcGCGUCGgUGUu -3' miRNA: 3'- cGCGGCCU--G---------------UGCCAGU-CGUAGCaACG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 43783 | 0.66 | 0.785219 |
Target: 5'- uCGCCGGGCAUGaG-CAGCG-CGg-GCa -3' miRNA: 3'- cGCGGCCUGUGC-CaGUCGUaGCaaCG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 45627 | 0.69 | 0.61847 |
Target: 5'- cCGCCGGGC-CGGgCAGCG-CGccggUGCc -3' miRNA: 3'- cGCGGCCUGuGCCaGUCGUaGCa---ACG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 46587 | 0.66 | 0.81346 |
Target: 5'- cGCGCCGcccGAgGCGaG-CAGCgcGUCGUUGg -3' miRNA: 3'- -CGCGGC---CUgUGC-CaGUCG--UAGCAACg -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 47531 | 0.67 | 0.724923 |
Target: 5'- cGUGCCGaAUGCGGagaUCAGCgGUCGaaUUGCg -3' miRNA: 3'- -CGCGGCcUGUGCC---AGUCG-UAGC--AACG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 48471 | 0.66 | 0.804215 |
Target: 5'- cGCGCCGGGuCGCG-UCGGCcuguuccUCGacGCg -3' miRNA: 3'- -CGCGGCCU-GUGCcAGUCGu------AGCaaCG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 49585 | 0.7 | 0.575669 |
Target: 5'- cCGgCGGGCGgGGUCAGCAccUCGaccucggGCa -3' miRNA: 3'- cGCgGCCUGUgCCAGUCGU--AGCaa-----CG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 51673 | 0.67 | 0.745489 |
Target: 5'- cGCGUCGGGCACGGgc-GCG-CGaUGg -3' miRNA: 3'- -CGCGGCCUGUGCCaguCGUaGCaACg -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 53948 | 0.7 | 0.541911 |
Target: 5'- aGCGuuucccacCCGGugaACAUGGUCAGCAggccgguauugaCGUUGCa -3' miRNA: 3'- -CGC--------GGCC---UGUGCCAGUCGUa-----------GCAACG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 54025 | 0.66 | 0.804215 |
Target: 5'- aCGCuCGGGCGCGGUgCGGUcugCGaaGCa -3' miRNA: 3'- cGCG-GCCUGUGCCA-GUCGua-GCaaCG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 58933 | 0.74 | 0.330287 |
Target: 5'- uCGgCGGGCGCGGUggCAGCGUCGgccuugGCc -3' miRNA: 3'- cGCgGCCUGUGCCA--GUCGUAGCaa----CG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 60531 | 0.69 | 0.650718 |
Target: 5'- -gGCCGGGC-CGGgacgCAGCcgcUCGUcgGCa -3' miRNA: 3'- cgCGGCCUGuGCCa---GUCGu--AGCAa-CG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 61066 | 0.76 | 0.258658 |
Target: 5'- uGUGCCGGGCAuCGGcauaGGCGUCGUcgGCc -3' miRNA: 3'- -CGCGGCCUGU-GCCag--UCGUAGCAa-CG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 63750 | 0.66 | 0.804215 |
Target: 5'- uCGgCGGGCACGaaCAGCAcacCGUUGUu -3' miRNA: 3'- cGCgGCCUGUGCcaGUCGUa--GCAACG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 65100 | 0.71 | 0.533571 |
Target: 5'- -gGCuCGuGGCACGGUCAGUgcgucaccGUCGgcGCa -3' miRNA: 3'- cgCG-GC-CUGUGCCAGUCG--------UAGCaaCG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 66221 | 0.67 | 0.714503 |
Target: 5'- cGCGCCGacgcacACGCGGUCGuGCAgccaUCGacGCa -3' miRNA: 3'- -CGCGGCc-----UGUGCCAGU-CGU----AGCaaCG- -5' |
|||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 66644 | 0.66 | 0.81346 |
Target: 5'- cCGCuCGGAUugcugcCGGUCGGCggUGcUGCg -3' miRNA: 3'- cGCG-GCCUGu-----GCCAGUCGuaGCaACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home