miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23278 5' -56.6 NC_005259.1 + 40859 0.66 0.715937
Target:  5'- ---gCCUCGACCAU--GGCCGcCCa- -3'
miRNA:   3'- uaaaGGAGCUGGUAgcCCGGCuGGac -5'
23278 5' -56.6 NC_005259.1 + 39977 0.66 0.705412
Target:  5'- --cUgCUCGACCAccucgaCGGGCUGAUCg- -3'
miRNA:   3'- uaaAgGAGCUGGUa-----GCCCGGCUGGac -5'
23278 5' -56.6 NC_005259.1 + 45454 0.66 0.694818
Target:  5'- --gUCCUUGAUCGgggugccgaaCGGGCCGAgcuUCUGg -3'
miRNA:   3'- uaaAGGAGCUGGUa---------GCCCGGCU---GGAC- -5'
23278 5' -56.6 NC_005259.1 + 48492 0.66 0.694818
Target:  5'- -gUUCCUCGACgCGcuugaGGGCCgcGACUUGc -3'
miRNA:   3'- uaAAGGAGCUG-GUag---CCCGG--CUGGAC- -5'
23278 5' -56.6 NC_005259.1 + 23474 0.67 0.651963
Target:  5'- ---gCCUCGGCauuGUCGGuGCCGACg-- -3'
miRNA:   3'- uaaaGGAGCUGg--UAGCC-CGGCUGgac -5'
23278 5' -56.6 NC_005259.1 + 13228 0.67 0.63039
Target:  5'- ---gCCUCGACCGgccaccgugaGGGCCGAgCa- -3'
miRNA:   3'- uaaaGGAGCUGGUag--------CCCGGCUgGac -5'
23278 5' -56.6 NC_005259.1 + 58074 0.68 0.576638
Target:  5'- ---aCCauUCGACCAgcUCGGGCCaGcCCUGc -3'
miRNA:   3'- uaaaGG--AGCUGGU--AGCCCGG-CuGGAC- -5'
23278 5' -56.6 NC_005259.1 + 54329 0.69 0.523968
Target:  5'- ---aCCUCGggGCCAUCGGGCCaGCa-- -3'
miRNA:   3'- uaaaGGAGC--UGGUAGCCCGGcUGgac -5'
23278 5' -56.6 NC_005259.1 + 37825 0.7 0.434497
Target:  5'- ----aCUCGACC-UCGGGCCacACCUGc -3'
miRNA:   3'- uaaagGAGCUGGuAGCCCGGc-UGGAC- -5'
23278 5' -56.6 NC_005259.1 + 67830 0.77 0.177961
Target:  5'- --gUCCUCGACCGgcagcccggugagCGGGUCGACCa- -3'
miRNA:   3'- uaaAGGAGCUGGUa------------GCCCGGCUGGac -5'
23278 5' -56.6 NC_005259.1 + 18716 0.81 0.096056
Target:  5'- ---aCCUCGAUCAUCGGGCCGcCCg- -3'
miRNA:   3'- uaaaGGAGCUGGUAGCCCGGCuGGac -5'
23278 5' -56.6 NC_005259.1 + 26714 1.06 0.001661
Target:  5'- gAUUUCCUCGACCAUCGGGCCGACCUGc -3'
miRNA:   3'- -UAAAGGAGCUGGUAGCCCGGCUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.